Detailed information on CNT30680318


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONTAET000224, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30110311Triticum urartuOryza longistaminata52.1894.3898.491126forward

Expression of CNT30680318

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MLCAGAIKAISLLLLVLDVAHDKGSWPFRLPRPDPKLSELGTTGTGVASTLSTVTW*

>peptide 2 (52 aa)
MINRDSRGHSYFIVRGEILGFMKDEQLRKHLPRMFSLIKNESWGLEDDQIPS*

>peptide 3 (33 aa)
MPTRDRRMLLIGLRRHLMRNQSLWVPGGVWSQG*

>peptide 4 (36 aa)
MITRRIARPSCRRRIIQISALSTFDGRIGAYHGGDG*

>peptide 5 (38 aa)
MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEPSLRS*

>peptide 6 (38 aa)
MADAGRHRGRATWLILPVVICLSQRLSHACASMNQFEL*

>peptide 7 (30 aa)
MVARLKLKGIDGRAPPGPDIARIDRLRALS*

>peptide 8 (30 aa)
MSSFGPVSAGRSPVVLRPTTGAVSRQLCDF*

>peptide 9 (90 aa)
MLLMIKGRGPSGCLDPTQSSLNWEQPEQELPLPSPQLRGRIRDSLRRSSRTMSYAAQQRQPARLLLVSFDASGSAGRWPTLGVTEDVLPG*

Sequence

>CNT30680318
GCGTGATTTGGCCTTGCAGGACGCCTTCGTGCAAGTGATCCTCCCGTGCTTTGCACGGGAGGAGGCTTGGTTGGTTTGACCGCTTGTTGGCTACTAAGCG
CATGAGCAGCTTTGGACCCGTGTCTGCCGGTAGATCCCCCGTTGTACTGCGGCCGACTACCGGCGCCGTGTCCCGTCAATTGTGTGACTTTTAATCGCTG
GATTAAGAGTGCTTGCGTGCTAGTACCCGACCTACGGGAAGTGGTGCTTCGTACAAAATTTACCTCGCGGCGGACGCCCTTTGGGTGTGCTGCTGTGGCC
GAATAGCTCTTGCGGCGTTGCCTCATCGTGCCGGCATGTTATGTGCCGGTGCTATCAAGGCAATCTCGCTCCTGCTATTGGTCTTGGATGTTGCTCATGA
TAAAGGGTCGTGGCCCTTCCGGTTGCCTCGACCCGACCCAAAGCTCTCTGAATTGGGAACAACCGGAACAGGAGTTGCCTCTACCCTCTCCACAGTTACG
TGGTAGGATACGCGACTCTCTGCGCCGATCCTCAAGGACGATGAGCTATGCCGCTCAACAGCGACAACCGGCCCGACTATTGCTTGTGAGTTTCGACGCA
AGTGGAAGCGCAGGGCGATGGCCGACGCTGGGCGTCACCGAGGACGTGCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCA
TGCATGTGCAAGTATGAACCAATTTGAACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTACGTGCTACTCGGATAACCGTA
GTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGGAGGGGCGCATTTATTAGATAAAAGGCTGACGCGGGCTCTGCTCGCTGATCCGATGAT
TCATGATAACTCGACGGATCGCACGGCCTTCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCATGG
TGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAAT
CCTGACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCGCATTAGTGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATT
GGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGACCTTGGGCCGG
GTCGGCCGGTCCGCCTCACGGCGAGCACCGACCTACTCGACCCTTCGGCCGGCATCGCGCTCCTAGCCTTAACTGGCCGGGTCGTGTTTCCGGCATCGTT
ACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAGGATTCCGGTCCTATTGTGTTGGCCTTCGGG
ATCGGAGTAATGATTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATT
TGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCG
GCGGATGTTGCTTATAGGACTCCGCCGGCACCTTATGAGAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTG
ACGGAAGGGCACCACCAGGTCCAGACATAGCAAGGATTGACAGACTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTG
GAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGCCATCCCTCCGCAGCTAGCTTCTTAGAGGGACTAT
CGCCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTATA
TAGCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGAT