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Detailed information on CNT30110311


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONTAET000308, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30193763Oryza longistaminataSecale cereale94.3864.0597.691126forward
CNT30140791Oryza longistaminataLolium perenne94.3868.798.131126forward
CNT30680318Oryza longistaminataTriticum urartu94.3852.1898.491126forward
CNT30369028Oryza longistaminataSorghum bicolor94.3879.6398.491126forward

Expression of CNT30110311

Peptides detected in this lncRNA

>peptide 1 (61 aa)
RAEXXXXTCNKPRLPGGAHLLDKRLTRAPPADPMIHDNSTDRTALVPATHHSNFCPINFRW*

>peptide 2 (52 aa)
MINRDSRGHSYFIVRGEILGFMKDEQLRKHLPRMFSLIKNESWGLEDDQIPS*

>peptide 3 (33 aa)
MPTRDRRMLLIGLRRHLMRNQSLWVPGGVWSQG*

>peptide 4 (30 aa)
MVARLKLKGIDGRAPPGPDIARIDRLRALS*

>peptide 5 (40 aa)
MGGGAWPFLVGGAICLVNSVNERDLASGAPSGPFLVSRTGD

>peptide 6 (36 aa)
MITRRIARPSCRRRIIQISALSTFDGRIGAYHGGDG*

Sequence

>CNT30110311
CGGGCTGAANNNNNNNNNNATACGTGCAACAAACCCCGACTTCCGGGAGGGGCGCATTTATTAGATAAAAGGCTGACGCGGGCTCCGCCCGCTGATCCGA
TGATTCATGATAACTCGACGGATCGCACGGCCCTCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACC
ATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACC
CAATCCTGACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCGCTTTAGTGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATC
CATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGACCTTGGG
CCGGGCCGGCCGGTCCGCCTCACGGCGAGCACCGACCTGCTCGACCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGCCTCCGGCGC
CGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAGGATTCCGGTCCTATTGTGTTGGCCTT
CGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAG
CATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGG
ATCGGCGGATGTTGCTTATAGGACTCCGCCGGCACCTTATGAGAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGA
ATTGACGGAAGGGCACCACCAGGTCCAGACATAGCAAGGATTGACAGACTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTT
GGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCGCATCAGGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGAT