« Back to Setaria viridis search


Detailed information on CNT30678606


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 1e-80

BLAST vs NONCODE:
NONCQUT008675, E-value = 4e-50

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3010836Setaria viridisZea mays56.3181.6892.65272forward

Expression of CNT30678606

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MMMTWEVTSIPGLMTPVSTRPTDFTSVVRPLGPKVTSIPGLMTPVSTRPTGTVPIPPILYTS*

>peptide 2 (60 aa)
SENVSTTMGLVGTIFTIPASPFFRNLGSFSSSLPDRLSILVTSSANLTAMCEVWQSSTGA*

>peptide 3 (51 aa)
LRECLHNHGLGGNHLHHTSITVLQELGLLLELLARSSVNLGNKLGKLDSNV*

>peptide 4 (41 aa)
TQRMSPQPWAWWEPSSPYQHHRSSGTWAPSRAPCQIVCQSW*

Sequence

>CNT30678606
ACTCAGAGAATGTCTCCACAACCATGGGCTTGGTGGGAACCATCTTCACCATACCAGCATCACCGTTCTTCAGGAACTTGGGCTCCTTCTCGAGCTCCTT
GCCAGATCGTCTGTCAATCTTGGTAACAAGCTCGGCAAACTTGACAGCAATGTGTGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCATTGCCGATCTGG
CCAGGGTGGTTCATGATGATGACCTGGGAGGTGACAAGCATACCAGGCTTGATGACACCAGTCTCTACACGACCAACAGACTTCACCTCAGTGGTCAGGC
CGCTGGGACCAAAGGTGACAAGCATACCAGGCTTGATGACACCAGTCTCTACACGACCAACAGGCACAGTTCCAATACCACCAATCTTGTACACATCCTG
AAGGGGGAGACGCAGGGGCTTGTCCGAAGGCCTCTTTGGCTCATTGATCAAGTCAAGAGCCTCAAGCAGTGTTGGGCCCTTGT