Detailed information on CNT3010836


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 1e-53

BLAST vs NONCODE:
NONBNAT001751, E-value = 3e-62

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678606Zea maysSetaria viridis81.6856.3192.65272forward
CNT30698284Zea maysQuercus lobata43.8451.0588.36146forward
CNT30503993Zea maysNicotiana attenuata58.2670.5587.11194forward
CNT30265127Zea maysBrassica rapa46.5560.7884.52155forward

Expression of CNT3010836

Peptides detected in this lncRNA

>peptide 1 (49 aa)
QQTYQGEDTLRTSPPPWAWSVSSSPYQHHRSSGTLAPSQAPCQTACRSW*

>peptide 2 (68 aa)
ANLPRGGYAENVSTTMGLVGIIFTIPASPFFRNFGSFSSSLPDRLSILVMSSANLTAMWEVWQSSTGA*

>peptide 3 (31 aa)
MMMTWEVTTIPGLMTPVSTRPTGTVPIPPILY

Sequence

>CNT3010836
CAGCAAACCTACCAAGGGGAGGATACGCTGAGAACGTCTCCACCACCATGGGCTTGGTCGGTATCATCTTCACCATACCAGCATCACCGTTCTTCAGGAA
CTTTGGCTCCTTCTCAAGCTCCTTGCCAGACCGCCTGTCGATCTTGGTAATGAGCTCAGCAAACTTGACAGCAATGTGGGAGGTGTGGCAGTCCAGCACT
GGGGCATAGCCGTTGCCAATCTGCCCAGGGTGGTTCATGATGATGACCTGGGAGGTGACAACCATACCAGGCTTGATGACACCAGTCTCCACACGACCAA
CCGGTACAGTTCCAATACCACCAATCTTGTACA