Detailed information on CNT30677695


BLAST search results

BLAST vs Swiss-Prot:
sp|P33632|TBB3_ANEPH, E-value = 1e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30562915Setaria viridisActinidia chinensis8.8732.4691.8974forward

Expression of CNT30677695

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MAGVALGHHGGRLKGAVGDLCNRQLLMAVELPARVSDLYTGLADVDRDALPHGVVGRVVRRRRRRR*

>peptide 2 (41 aa)
MRSNLWSMRENTSTTLVELEIMHTARCTLARSPPGTTLGGW*

>peptide 3 (49 aa)
MWIEMHSLMVSSEGWCGGDGGGGREWEDGESFESRERRVRRRLPLRCSA*

>peptide 4 (74 aa)
MPHLNPVGHQSTNWMVRLVLMVATAALTSLGTTSPRYMRQQAMYLPWRGSHLAIMEDGSKALLVISATDSCSWQ*

>peptide 5 (60 aa)
QKRSRTKQVSYNIRCCKRHTTTDNSSNRHTDTQQDKIGATRADHRITAAHRPDTAAGSIV*

Sequence

>CNT30677695
CCAGAAACGAAGCAGGACTAAACAAGTTTCTTACAACATAAGATGTTGTAAACGACATACGACGACAGATAACAGTTCAAACCGACACACCGACACACAA
CAAGATAAGATAGGAGCCACTCGGGCAGATCATAGGATAACCGCGGCACACAGGCCTGACACAGCAGCAGGAAGCATCGTCTAGTACTCGTCACCCTCGT
CTCCTTCCTCGCCCTCGTCGAACTCAGCGCCGACCTCCTCGTAGTCCTTCTCGAGCGCAGCCAGTGAACGAAGGCACGCTTGGCGTACATGAGGTCAAAC
TTGTGGTCGATGCGGGAGAACACCTCGACCACGCTGGTGGAGTTGGAGATCATGCACACGGCACGCTGCACCTTGGCCAGGTCACCGCCAGGCACCACGC
TGGGGGGCTGGTAGTTGATGCCGCACTTGAACCCAGTGGGGCACCAGTCCACGAACTGGATGGTGCGCTTGGTCTTGATGGTGGCAACAGCAGCGTTGAC
GTCCTTGGGCACCACATCACCACGGTACATGAGGCAGCAAGCCATGTACTTGCCATGGCGGGGGTCGCACTTGGCCATCATGGAGGACGGCTCAAAGGCG
CTGTTGGTGATCTCTGCAACAGACAGCTGCTCATGGCAGTAGAGCTCCCAGCACGCGTTTCCGACCTGTATACCGGCCTGGCCGATGTGGATCGAGATGC
ACTCCCTCATGGTGTCGTCGGAAGGGTGGTGCGGCGGCGACGGCGGCGGCGGTAGGGAATGGGAGGACGGGGAAAGCTTTGAGTCGCGAGAGAGGCGAGT
ACGAAGACGCCTTCCTCTGCGGTGCTCGGCTTAG