Detailed information on CNT30676458


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30473249Setaria viridisSaccharum spontaneum42.3935.7188.24170forward

Expression of CNT30676458

Peptides detected in this lncRNA

>peptide 1 (61 aa)
PATRKITEIYSNRNQATNRDLNWVIFALQAQLHYIRRDLLLPEKSPYNGRQRLMPVAVAWR*

>peptide 2 (29 aa)
MTTGKSMTTTFSSAAMNVAANAACFSWAM*

>peptide 3 (38 aa)
MSSTTTPSLNFTRHRCFTSAMALPRSSSSEWLCRTRGVD

>peptide 4 (75 aa)
MADRGSCLWRWLGDDDGEVDDDHLLECGHERGGERGVLLVGHVGGEDVLHHDALLELHQAQVLHLRHGTPSLLFQ*

Sequence

>CNT30676458
ACCTGCTACCAGAAAGATCACTGAAATTTATTCCAATAGGAATCAAGCAACCAATAGGGACTTGAACTGGGTGATATTTGCCTTACAGGCACAGCTACAC
TACATACGACGAGATCTGCTGCTACCTGAAAAGTCACCGTACAATGGCCGACAGAGGCTCATGCCTGTGGCGGTGGCTTGGCGATGACGACGGGGAAGTC
GATGACGACCACCTTCTCGAGTGCGGCCATGAACGTGGCGGCGAACGCGGCGTGCTTCTCGTGGGCCATGTAGGCGGTGAGGATGTCCTCCACCACGACG
CCCTCCTTGAACTTCACCAGGCACAGGTGCTTCACCTCCGCCATGGCACTCCCTCGCTCCTCTTCCAGTGAGTGGCTTTGCAGAACGAGAGGTGTGGATG
G