Detailed information on CNT30675800


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30358059Setaria viridisLactuca sativa31.7918.7280.9199forward

Expression of CNT30675800

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MYVLLSPSAHQIGDHSPSTQPEKVWMMVLCHGSDRCCSRLSKGCSS*

>peptide 2 (97 aa)
MGRTGAAAGCRRAVALEDGVLVDAAGVLDVLPPPDLDVVEEDELDDEQRGRRREVLRLAGVVPLRRVDEPGLGQHLRDQHPGHPQHRRGATRPWPPP*

>peptide 3 (88 aa)
MNSMTNSVDDDAKYSDLPASYHCGALMSPALVSTSGISIPATPSIAGEPLALGLRPEAAPRRAATGVRAVTDAMLRGEMGVAEEWRGRA

>peptide 4 (60 aa)
IPITPQYSLSSPCIQHYYNTVLNLLSGLNTHHKLMIHTERNSHRSRFNVCPPVPISPPNW*

Sequence

>CNT30675800
ACATACCAATCACCCCTCAGTACTCACTCTCCTCACCATGCATACAGCATTATTACAACACAGTCCTTAATCTCCTCTCCGGATTAAACACACATCACAA
ACTGATGATCCACACAGAAAGGAATTCACATCGATCGCGTTTCAATGTATGTCCTCCTGTCCCCATCAGCCCACCAAATTGGTGATCACTCCCCGTCGAC
TCAACCGGAGAAAGTCTGGATGATGGTGTTGTGCCATGGGTCGGACAGGTGCTGCAGCAGGTTGTCGAAGGGCTGTAGCTCTTGAAGATGGGGTCCTGGT
TGACGCTGCCGGGGTTCTTGATGTCCTGCCACCGCCGGATCTCGACGTAGTGGAAGAGGATGAACTCGATGACGAACAGCGTGGACGACGACGCGAAGTA
CTCCGACTTGCCGGCGTCGTACCACTGCGGCGCGTTGATGAGCCCGGCCTTGGTCAGCACCTCCGGGATCAGCATCCCGGCCACCCCCAGCATCGCCGGG
GAGCCACTCGCCCTTGGCCTCCGCCCTGAGGCTGCGCCTCGTCGGGCCGCGACCGGGGTGCGGGCGGTGACGGACGCCATGCTTCGCGGTGAGATGGGAG
TGGCAGAGGAATGGAGAGGAAGAGCA