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Detailed information on CNT30675797


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9C5N2|TMN9_ARATH, E-value = 1e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695507Setaria viridisOryza sativa46.4427.6688.75320forward
CNT30469220Setaria viridisSaccharum spontaneum47.3122.1894.48326forward
CNT30102948Setaria viridisOryza rufipogon46.4420.5188.75320forward
CNT30577272Setaria viridisOryza barthii46.4431.2588.75320forward

Expression of CNT30675797

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MVKGIPKQRKSWLLAAYQRTEHQSQRRHRVSQSFQEVGTHLREQASILSLLGLLLQFQAGCTWRYLYTECGA*

>peptide 2 (33 aa)
MKKSSIKTAPNGRMPPIRTVKKHIQQTIPSRPK*

>peptide 3 (29 aa)
MAVISPPRFDGERNPKTAKIMVTSSIPKN*

Sequence

>CNT30675797
ACAGTCTCATGCGATCAAGCCTAGTCGATCTTCACAGATGAGTAGATCAATCTCGTGAACCAGAAGCAGGCGCAGAAGCCGATTGCACCGGTAAGCACAC
AGAACGCAAACGAGGCGAGAAGCATGTAGCCAAAGTACAGTATGCCTGACACCAGTTTGGTGATCTGCAGCTTAGTGAAGAAGTAGAACCCGGCATACAG
GAAGAGGTAGATTGCAGATGATCCTGAGGTGATGATGAGGATAATGAACACCAGGAAAAGGAAGCCAAAGATGTAGTAGAACTGGTGAAGCCAAATCGAT
GTGAGGATGAAGAAGAGCTCAATAAAGACAGCCCCAAATGGAAGAATGCCACCAATAAGAACGGTGAAGAAGCATATCCAGCAAACAATCCCATCAAGAC
CCAAGTGAGCAGCATGGCAGTCATCAGCCCTCCTCGGTTTGATGGTGAAAGGAATCCCAAAACAGCGAAAATCATGGTTACTAGCAGCATACCAAAGAAC
TGAACACCAGTCCCAACGCAGACACAGAGTAAGTCAGAGTTTTCAGGAGGTCGGAACACATCTCCGTGAACAAGCTTCCATCCTGTCTCTTCTTGGGCTT
CTTCTTCAGTTTCAAGCTGGTTGTACCTGGAGATATCTCTATACAGAGTGCGGAGCATAATCATGGCCACCATCCCAGATAAGAAGAGT