Detailed information on CNT30675396


BLAST search results

BLAST vs Swiss-Prot:
sp|O49079|PSBO_FRIAG, E-value = 2e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30710434Setaria viridisGlycine max24.38.2284.6278forward
CNT30724033Setaria viridisLupinus angustifolius50.1614.3480.12161forward

Expression of CNT30675396

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MTSPVSGLLLVTLNVMLPVDDAAWAQGRARRSSRACRDAAMVVVAAPALSCLWCEIVCR

>peptide 2 (84 aa)
FFIVHFPIHDGRLVRLELRVPDPLDLHILRCLGPKVGVRRLHTLEDTDDLASFRVALGDAQCDVARRRRSLGTRKGPPKLSGLP*

Sequence

>CNT30675396
AGTTTTTCATAGTACACTTTCCCATCCATGACGGACGTCTAGTTAGACTCGAGCTGCGCGTACCAGATCCCCTGGATCTTCACATCCTTAGGTGCCTTGG
CCCCAAGGTCGGTGTCCGACGGCTGCACACTCTCGAAGACACCGATGACCTCGCCAGTTTCCGGGTTGCTCTTGGTGACGCTCAATGTGATGTTGCCCGT
CGACGACGCAGCCTGGGCACAAGGAAGGGCCCGCCGAAGCTCTCGGGCTTGCCGTGACGCTGCCATGGTCGTCGTCGCTGCGCCTGCGCTGTCCTGCCTC
TGGTGTGAGATTGTGTGTCGC