Detailed information on CNT30675153


BLAST search results

BLAST vs Swiss-Prot:
sp|P08440|ALF_MAIZE, E-value = 2e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513666Setaria viridisJuglans regia27.8324.982.81128forward

Expression of CNT30675153

Peptides detected in this lncRNA

>peptide 1 (48 aa)
KISEQKACPPTNSAYRMVLPIYNQHFSKDKQNVAARFSIGRSKLHEIN*

>peptide 2 (55 aa)
RRYQSKRPAPRPTQHIEWFCRYITSISAKINKMWLHDSPSAGPNYTRLINTNETT*

Sequence

>CNT30675153
CGAAGATATCAGAGCAAAAGGCCTGCCCCCCGACCAACTCAGCATATAGAATGGTTTTGCCGATATATAACCAGCATTTCAGCAAAGATAAACAAAATGT
GGCTGCACGATTCTCCATCGGCAGGTCCAAATTACACGAGATTAATTAACACCAACGAAACTACTTAATATACGAAAATGTAAAGGTAACGAACCATCAT
CCACAAAAGGGAAGCAGGTTCAGGTTTTCTTGATGTCCGGATATATGCTCTAAGGAGCAAACCACACTCAGCAACAGGTCAATGGCAAGCTGCGATGGCT
CATTGGGGCCGATCTTGAGGACAGCACGCCACTTGGCAAAGCGGGCACCAGCCTCGTAGTACTTGGCGCAGCGCTTGCCAAGGTCATCATGGCCCTGGGT
GGTGGTCTCCTTGTCAAGAATCACACCACTCAGGCACGGGAGGGCACCAGGGCAGCAGAA