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Detailed information on CNT30673109


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 6e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30367875Setaria viridisSorghum bicolor31.2728.7896.64238forward

Expression of CNT30673109

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MTMLVLVQVSQATLLSGSSARQASSTASETWSQSLSGCPSFTDSEVKRKVSTAAIFSDLQ

>peptide 2 (38 aa)
MIARGRSRITTQKPPNMISAADQKLLLKGRLRQKASPT*

Sequence

>CNT30673109
CAGTAATACCCTCACAAGTACCACTTATTAGGACAGTACAATACAAATGATAGCAAGGGGCAGATCAAGAATCACAACACAGAAGCCACCAAACATGATA
AGCGCAGCAGACCAAAAGCTTCTTCTCAAAGGGCGCCTTAGGCAGAAGGCTTCTCCCACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCAGGGTCGTC
CCTTCCGAAGTGACCGTAGGCAGCTGTCTTGAGGATCTCCTTGTCGGGGATCGTGCCAGTGCCATATGTGTCAACAAACACGGAGAGGGGCTCAGGCACA
CCGATGGCATAGGAGACCTGGACGATGGCGCGGCGAGCAAGGCCATTAGCGACAATGCTCTTGGCAGCTTGCCTGGCAATGTAGGCTCCACTGCGGTCAA
CCTTGGTTGGGTCCTTGCCGGAGAAAGCACCACCACCGTGGGCTCCCCAGCCACCATAGGTGGAAGATGGTCTTCTCGTCAAGCCCGACATCTGCCGACA
CGAAACCGATGTTGCGGCAAGTGTCCCTGACAATCTTCTCGTAGTCGACGTTGGCCTTGGTGGTGATCTCACCAAAGACCATGACCATGTTAGTCTTGGT
GCAGGTCTCGCAAGCAACCTTGCTGTCGGGGTCCTCAGCAAGGCAAGCATCAAGCACAGCATCTGAGACCTGGTCGCAGAGCTTGTCAGGGTGTCCCTCA
TTCACGGACTCCGAGGTGAAGAGGAAGGTGTCGACTGCGGCCATCTTTTCTGATCTGCAGC