Detailed information on CNT30673052


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 2e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30402686Setaria viridisBeta vulgaris66.6767.9985.37410forward

Expression of CNT30673052

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MRSTDDKATRWVKVEDGLLVKVLLRDDRLDDMLLEVSGNLIVGDCLVVLGRDEDRGGVDEDEMVTSWGVLVSDPTRPQRT

>peptide 2 (59 aa)
MTKRPDGLRWKMVFSSRYCSGMTGLMTCSLRSAAISSLVTVSSCWVEMRTEAGWMRMRW*

>peptide 3 (42 aa)
MMIMPGLKSKFSLIILRISLSGIVPVPYVSMMIFRPVRPASP*

>peptide 4 (38 aa)
LLGQYNTNDSKGQIKNHNTEATKHDKRSRPKASSQRAP*

>peptide 5 (38 aa)
MIARGRSRITTQKPPNMISAADQKLLLKGRLRQKASPT*

Sequence

>CNT30673052
ACTTATTAGGACAGTACAATACAAATGATAGCAAGGGGCAGATCAAGAATCACAACACAGAAGCCACCAAACATGATAAGCGCAGCAGACCAAAAGCTTC
TTCTCAAAGGGCGCCTTAGGCAGAAGGCTTCTCCCACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCAGGGTCGTCCCTTCCGAAGTGACCGTAGGCA
GCTGTCTTGAGGTAGCGCCCGTTGCCGCCTTTCTTGAGGTCAAGGTTGATGATGATCATGCCAGGCCTGAAGTCGAAGTTCTCCTTAATAATCTTGAGGA
TCTCCTTGTCGGGGATCGTGCCAGTGCCATATGTGTCAATGATGATCTTCCGGCCAGTGAGACCAGCATCACCATGAGGTCCACCGATGACAAAGCGACC
AGATGGGTTAAGGTGGAAGATGGTCTTCTCGTCAAGGTACTGCTCAGGGATGACAGGCTTGATGACATGCTCCTTGAGGTCAGCGGCAATCTCATCGTTG
GTGACTGTCTCGTCGTGCTGGGTAGAGATGAGGACAGAGGCGGGGTGGATGAGGATGAGATGGTAACAAGTTGGGGAGTGCTCGTCTCAGATCCGACCCG
GCCGCAGCGCACGCC