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Detailed information on CNT30672530


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 5e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30349160Setaria viridisEragrostis tef46.230.8591.26286forward

Expression of CNT30672530

Peptides detected in this lncRNA

>peptide 1 (33 aa)
NTNDSKGQIKNHNTEATKHDKRSRPKASSQRAP*

>peptide 2 (41 aa)
TIQMIARGRSRITTQKPPNMISAADQKLLLKGRLRQKASPT*

>peptide 3 (42 aa)
MMIMPGLKSKFSLIILRISLSGIVPVPYVSTNTERGSGTPMA*

>peptide 4 (49 aa)
MRTVWTRMGTIAPPSLRYSTVTWVFPSGLSQGQVPFLRTSVKRKVSTAAI

Sequence

>CNT30672530
ACAATACAAATGATAGCAAGGGGCAGATCAAGAATCACAACACAGAAGCCACCAAACATGATAAGCGCAGCAGACCAAAAGCTTCTTCTCAAAGGGCGCC
TTAGGCAGAAGGCTTCTCCCACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCAGGGTCGTCCCTTCCGAAGTGACCGTAGGCAGCTGTCTTGAGGTCA
AGGTTGATGATGATCATGCCAGGCCTGAAGTCGAAGTTCTCCTTAATAATCTTGAGGATCTCCTTGTCGGGGATCGTGCCAGTGCCATATGTGTCAACAA
ACACGGAGAGGGGCTCAGGCACACCGATGGCATAGGAGACCTGGACGATGGCGCGGCGAGCAAGGCCATTAGCGACAATGCTCTTGGCAGCTTGCCTGGC
AATGTAGGCTCCACTGCGGTCAGCGGCAATCTCATCGTTGGTGACTGTCTCGTCGTGCTGGGTAGAGATGAGGACAGTGTGGACACGGATGGGGACCATC
GCACCACCCTCATTGCGGTACTCGACAGTCACCTGGGTCTTCCCATCAGGCCTGAGCCAGGGGCAGGTCCCATTCTTGCGCACCTCTGTGAAGAGGAAGG
TGTCGACTGCGGCCATCTT