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Detailed information on CNT30655409


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30501326Rosa chinensisCoffea canephora36.122.5494.03268reverse complement
CNT3020834Rosa chinensisCitrullus lanatus33.9630.8895.24252forward

Expression of CNT30655409

Peptides detected in this lncRNA

>peptide 1 (58 aa)
VGNVRRRLSVSDGKIPMVGISLKAQTERINGLFGGYLRHFSANQKDWSCWMLLSAAIT*

Sequence

>CNT30655409
GGTCGGTAATGTTAGAAGACGACTGTCGGTATCAGATGGTAAGATACCTATGGTCGGTATATCTTTGAAAGCTCAGACGGAGAGAATTAACGGACTCTTC
GGGGGCTACTTAAGGCACTTTAGTGCAAACCAGAAGGACTGGAGCTGTTGGATGTTGCTCAGTGCTGCTATAACTTAACAACCAAAAAGCTTTGCGTCGA
ACTTCAGCCCCTTCGAGTTGGCCACGGAGCAACAGCCTCTGACGCCCCACACCATTGCGGCAGGAGGGGGCTTGCCCATCAGCCTACTTTGCCAAGAGGT
GGCAGGAGCGCAACGACCTAGCCCAACCTACTTAAACAACCTAATGGCTTGACCCGGTCTAAAGGAAGAAGAAAGTAGACCTTGTAGAGTAGAGAAGGGA
GGGGTAGCCTATAGACAGACTCAAGCGATCAGCTCGGTGAAAACTCACCCCGTATTCCATGTGAGTCAGTTGACTTCGATTAGACCAGACCGCCCCAGAG
AAGACCCACGAGGGCACCACCGGATGTTTTATATAAACTTACTAAAGAAGAAGTTGAGTATATCATAGATGACCGCACCATGGGCTAGCCCATACACCCA
CTGCACGAGCGGAATACTACTTAGTCAAGTAGAAGGGCCAACCTGAGAGCGAGGCGGAACGGGCTGAAACTTACGATTACGATTCGAGAAGACCAAGTCA
GAGACTACTGGACGTCTCGCAGAGCGACTCTCAACGAGGACG