« Back to Rosa chinensis search


Detailed information on CNT30651211


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 5e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3043735Rosa chinensisPrunus dulcis68.27101.0984.86370forward

Expression of CNT30651211

Peptides detected in this lncRNA

>peptide 1 (31 aa)
SPIMLLLALDTFDDVDIKDDVSFFASRFISD*

>peptide 2 (63 aa)
MMYPSLPHVSSATDRTQPAQEHGALYHHLLRPLASFLVEEVDEVVMVSHSREWELYQQGHLQI*

Sequence

>CNT30651211
TCTCCCCAATCATGTTGCTCCTTGCACTAGATACATTCGATGATGTAGATATTAAAGATGATGTATCCTTCTTTGCCTCACGTTTCATCAGCGACTGATA
GAACTCAACCAGCTCAGGAGCACGGTGCACTTTATCACCACCTCCTGCGCCCCTTGGCAAGCTTCCTGGTGGAGGAGGTGGACGAGGTGGTAATGGTATC
CCACTCGAGGGAGTGGGAGTTGTACCAACAGGGGCACCTCCAGATTTAGGAGGTGGCCGAGGCACCCTAGGAGGTCTCTTCTCAATTTGAGCAAGTTTCA
TCTTGCTTATTTCTTGAGGATCAAAAGCCTTACCACCATCCGCTTGGTTGCTTGAATCACCCGAAATAACTGCCTTCTCCTTTATAAGGGTAAGTTTGGG
TGGCAAACTAACTATTCTATCCTTGTCAGCTTTTGTTCTAGGCTCGTAGCTGAAACTTACATTTGATTTATCACCAAACTTCTCTGCTCTTGCCTGATCA
GCCCTTTCCTTAATTTGTTTTTCCCTCTCTAAGGCCAACTTA