« Back to Nymphaea colorata search


Detailed information on CNT30640643


BLAST search results

BLAST vs Swiss-Prot:
sp|P16130|RBS2_ACEPE, E-value = 4e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30124778Nymphaea colorataPhyscomitrium patens13.1821.9690.7765forward
CNT30613051Nymphaea colorataArabis alpina16.2320.6786.2580forward
CNT3039544Nymphaea colorataMarchantia polymorpha14.426.6987.3271forward

Expression of CNT30640643

Peptides detected in this lncRNA

>peptide 1 (85 aa)
VVMFSNKHSHSQTIAGELWQKEILKGKDAKTNNVTEDTMRGKGTEKAIISASLFGLGYSFLHSASSLNTWAESLQPNMGNFHMTQ*

Sequence

>CNT30640643
TGGTTGTTATGTTCTCAAATAAACACAGCCATTCTCAAACCATTGCTGGAGAGCTGTGGCAAAAAGAGATATTGAAAGGAAAAGACGCTAAAACAAACAA
CGTAACAGAGGACACTATGAGAGGGAAAGGGACAGAGAAGGCCATCATCTCTGCTTCCTTATTTGGGTTGGGGTACTCCTTCTTGCACTCAGCCAGTTCC
CTCAACACTTGGGCGGAGTCGTTGCAACCGAACATGGGCAACTTCCACATGACCCAGTAGCGGCCATCATCATCATGGAGGAAGCCATTTTTTTCTCTGC
CTGGCCCCTTACGGTTCCTCTGCTTGAGAACTGCAGCTGGCTGTGCTGAGGAGACCTCCCCCTCCAGCTGCACCCTATATATAACTCGCTCCGCCCCTCC
TCCGCTCTTGCCGCGGATCCGACGGCCCTTGTTCGGTCCTCCAAATCTTGGCTCCCCGTCGGCCGTTGGATCCAAGGCTGGTGACATTTCTTC