Detailed information on CNT30124778


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 4e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640643Physcomitrium patensNymphaea colorata21.9613.1890.7765forward
CNT30317063Physcomitrium patensCorylus avellana32.0916.4486.3295forward
CNT30481499Physcomitrium patensChara braunii31.769.2185.1194forward
CNT30585439Physcomitrium patensEchinochloa crusgalli40.8819.1284.3121forward
CNT3040426Physcomitrium patensMarchantia polymorpha32.0916.7887.3795forward

Expression of CNT30124778

Peptides detected in this lncRNA

>peptide 1 (97 aa)
GKSFSWAWRPRNRRSGPASHCQSPTRARSSQGRFSCTPRSPSTPGRSPGNRTWAASTWSSSDRHSTQGMSCWYETHRWRSVYEPRQPLRSVGFKKMIN

>peptide 2 (69 aa)
SANRLVGPGDQETADLDLLHIVKAQHAHEAAREGFLALLDLPQHLGGVLATEHGQLPHGPVATVIVPRG*

Sequence

>CNT30124778
TCGGCAAATCGTTTAGTTGGGCCTGGCGACCAAGAAACCGCAGATCTGGACCTGCTTCACATTGTCAAAGCCCAACACGCGCACGAAGCAGCCAGGGAAG
GTTTTCTTGCACTCCTCGATCTCCCTCAACACCTGGGCGGAGTCCTGGCAACCGAACATGGGCAGCTTCCACATGGTCCAGTAGCGACCGTCATAGTACC
CAGGGGATGAGTTGTTGGTACGAGACACACCGTTGGCGTTCTGTTTATGAGCCACGCCAGCCATTACGATCAGTAGGCTTTAAGAAAATGATAAAC