Detailed information on CNT30635861


BLAST search results

BLAST vs Swiss-Prot:
sp|P69325|UBIQP_SOYBN, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 4e-155

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701196Capsicum annuumQuercus lobata37.3278.1684.43687forward

Expression of CNT30635861

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSKVMVLPVRVLTKICIPPRSLSTKWSVDSFWML*

>peptide 2 (44 aa)
MPSLSWIFAFTLSMVSELSTSRVIVFPVRVLTKICIPPRRRRTR*

>peptide 3 (29 aa)
MEKKPSNFSPSSAPPKQLDKKSRLFNSER*

>peptide 4 (30 aa)
MDDPFETIIANTYNHHNGRRNRTNTTTTNK*

>peptide 5 (86 aa)
MVSELSTSKVMVFPVRVFTKICICKQQQTKRSKNEKNSNFKALSTLNEKLNYLTIKNNEKNSNFSVYSNPKDETELNNQSNGKLKL*

>peptide 6 (85 aa)
MERRLLLDVVVSEGSAVFELLSGEDQPLLVWGDSLLILNLGLDIVDGVGAFHLQGDGLSGESFHKDLHLQTTTNQTIKKRKKFQL*

>peptide 7 (71 aa)
MKKTQAFPDPKQWKKNPQILALLQLLPNNWIKNRAYSTPKDEIKLLYNQNNEKNQIIRPFQLQTMKKKLTF*

>peptide 8 (67 aa)
MILLRPSLQTHITTTMGDETEPTRQPPTNRHHLKNHHGDGGQGEGWILSGYYSQQGCGHPPTVFLQK*

>peptide 9 (53 aa)
MPSLSWILALTLSMVSELSTSKVMVFPVRVLTKICIPPRRRSTKWRVDSFWML*

>peptide 10 (47 aa)
KTRQLPYEEKLRPNLHSHILTKEEQKNKKHGSLQTQDTNKRPIFIQI*

Sequence

>CNT30635861
AAAAAACTCGTCAACTGCCATATGAAGAGAAACTAAGACCAAATCTTCATTCACACATTTTAACCAAAGAGGAACAGAAAAACAAAAAACACGGATCATT
GCAAACACAAGACACCAATAAAAGACCAATCTTTATTCAAATATAAAAGAAACACAAGGGAACAGAAACATAAAAAGACATGGATGATCCTTTTGAGACC
ATCATTGCAAACACATATAACCACCACAATGGGCGACGAAACAGAACCAACACGACAACCACCAACAAATAGGCATCATCTTAAAAACCACCACGGAGAC
GGAGGACAAGGTGAAGGGTGGATTCTTTCTGGATATTATAGTCAGCAAGGGTGCGGCCATCCTCCAACTGTTTTCCTGCAAAAATAAGCCTCTGCTGGTC
TGGGGGGATGCCCTCCTTGTCCTGGATTTTCGCCTTCACATTGTCGATGGTGTCGGAGCTCTCAACCTCGAGGGTAATAGTCTTTCCCGTGAGGGTCTTA
ACAAAAATCTGCATACCACCACGGAGACGGAGGACAAGGTGAAGGGTACTCTCCTTCTGGATGTTGTAGTCCGCGAGGGTACGGCCATCTTCTAGCTGCT
TTCCGGCAAATATAAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCTATGGTATCTGAGCTTTCCACCTCCAA
AGTAATGGTCTTCCCTGTGAGGGTCTTAACAAAAATCTGCATACCACCGCGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCA
GCTAGAGTACGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATTCCCTCCTTATCTTGAATCTTGGCCTTGACATTGT
CGATGGTGTCGGAGCTCTCCACTTCCAAAGTAATGGTCTTGCCTGTGAGGGTCTTAACGAAAATTTGCATCCCACCACGTAGCCTCAGCACCAAATGGAG
CGTAGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTTCGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATTCCCTCC
TTATCTTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTTTCCACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATCT
GCAAACAACAACAAACCAAACGATCAAAAAACGAAAAAAATTCCAACTTTAAGGCTTTATCAACCCTAAACGAGAAATTAAACTATTTAACAATCAAAAA
CAACGAAAAAAACTCAAATTTTAGCGTTTATTCAAATCCGAAAGATGAAACTGAACTTAACAATCAAAGCAACGGAAAACTCAAATTATAGGGCTTGTTA
AGCTCCCATACAATGAAAAAAACACAAGCTTTTCCAGATCCAAAACAATGGAAAAAAAACCCTCAAATTTTAGCCCTTCTTCAGCTCCTCCCAAACAATT
GGATAAAAAATCGCGCTTATTCAACTCCGAAAGATGAAATTAAACTACTTTACAATCAAAACAACGAAAAAAATCAAATTATAAGACCTTTTCAACTCCA
AACAATGAAAAAAAAACTCACATTTTAGGGCCTTTTCAGCTTAAAACAAATTGGAAAAAAAAAAAAAAAACTCAATTTTAGAGGGCTTTTTCAGCTCCGA
AACGATCGAAAAAAACTCAAATTCTAGGGCTATTTCAGCACCCAAAATAACAAATTAAAAAAACAAAAACAAAACATTGATGAAAATTTCTAACCTTGAA
CGAGAAATTTGAAGGCAATTGAGAGAGATTATGAAGAAAAT