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Detailed information on CNT30625828


BLAST search results

BLAST vs Swiss-Prot:
sp|O65015|AMYB_TRIRP, E-value = 3e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30709279Daucus carotaGlycine max9.9121.5187.04108forward
CNT30705167Daucus carotaPrunus avium9.5431.3386.54104forward

Expression of CNT30625828

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLVKRTCGFEAFNEAMEFVVEEMIKMDDS*

>peptide 2 (65 aa)
MWALNVRVCVKSCAFAGLIFSNFCSVDWRNIGWLSRDSAGLWQIVRGLLGVHVGCVNVSETNVWF*

Sequence

>CNT30625828
CTGCGGTCCACTCTTAGCATTTTCAGGCTGTTCAGAGTTTCTCATTTCTAGACATGTGAAATTTAGAACACTGTAGTGCCTGGACAGCATCCTTGCTATT
GGTCGATAGCCATCTCTGTCGTTCAAGTTGTAGAATCCGGCAGTTAGCTCCGCAGCATGACTGTCATCTTTATACCACCAATGGATTCCGGAAACCTGTT
TTGAAGTAGAATTATATATTTTCACATTTCAGGTCACATGCAATATTGAAGGGTTTGATGTTTTGGTCATTTAGGATTTACCTTAGCTGCTAATTTGACA
CTGCATCCTAGAAAAGCTTTATTGGCTTCATCAAGGATCTGATCACCATGTTTCAGCAAATTGTTAGAATACCAGGTCAAGAAAAACTTTCCTTTTGCAG
TTAAGTACTCTGCCGATCCAAAGAACTCTGTTGATCCAGGAAAAACCCATCCTTGGTTTTCTGGATAAGAGGGATATCTGAGCTCCCCTGCAGGACCTAG
CCCTACTTCAATGTCTGTTAAGAGTTCAGCATCCAAATAATCTGCCATGTTGTCTCTAAAGCTCTTCATGAAGTCACTGTAAATCTACAGATTTCAAGAT
ATTATATATTTATCCGTGCTAGATATCTGTCTAACAATCCAAACTTGACAAATTGAAGACTGTTTACCTCTTGGTCAGTGGTGAAGACCTCAGTCGTAGT
AGCTTGAATCTTTTCAACTGTTATGTGGGCGCTAAATGTCAGAGTATGCGTGAAGTCTTGTGCATTTGCTGGCTTAATTTTCTCAAACTTTTGCAGTGTT
GATTGGAGAAATATAGGATGGCTTAGTCGAGACTCTGCTGGCTTGTGGCAAATTGTTCGAGGTCTTCTGGGTGTGCATGTTGGCTGTGTGAATGTTAGTG
AAACGAACGTGTGGTTTTGAAGCTTTTAATGAAGCCATGGAGTTTGTGGTGGAAGAGATGATCAAGATGGATGATTCTTAGAAAACAAGTGGCTTGTGAT
TTTTTTACAAATATGCATAGCAACAAATAGCAGCACAATTATCTAGTTTGTGTCTTGTTATTTTGGTCTGTATAAATTGACTCATCAAAT