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Detailed information on CNT30609839


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-159

BLAST vs NONCODE:
NONGMAT000502, E-value = 2e-112

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3032081Gossypium raimondiiTheobroma cacao74.3178.4885.43700forward

Expression of CNT30609839

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MRRCWSGGMPSLSWILAFTLSIVSELSTSRVIVFPVSVLTKICIPPRKRRTRWRVDSFWML*

>peptide 2 (39 aa)
MPSLSWILAFTLSIVSELSTSSVIVLPVRVLTKICILFG*

>peptide 3 (30 aa)
TSKKNSLRRTENIGKYANSIQRETIHRCNR*

Sequence

>CNT30609839
TCACTTCCAAGAAAAATAGTTTACGAAGAACAGAGAATATAGGTAAATATGCAAATTCCATTCAAAGAGAAACCATACATAGATGCAACCGGTAAACAAA
GACTAGAAATTATTTAAAAGGCCACCAAAGGGCACAATCCTTCACGTAAAACCAGAAAACCCACATTAAGGAAGACCTTAAGGCTTAGAACCCACCACGA
AGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAGCTGTTTCCCAGCAAAAATCAACCTTTGCT
GATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTCGCTTTCACGTTATCAATCGTATCCGAGCTCTCCACTTCTAAAGTAATCGTCTTACCGGTCAAAGT
CTTGACGAAGATCTGCATCCCACCTCGAAGACGTAGAACCAGATGAAGAGTCGATTCCTTCTGGATATTGTAATCGGCTAAAGTCCGCCCGTCCTCGAGT
TGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTCACGTTGTCGATCGTGTCAGAGCTCTCGACCT
CGAGAGTGATCGTCTTTCCGGTAAGCGTCTTAACGAAGATTTGCATCCCGCCGCGCAAACGAAGGACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTA
GTCGGCCAAGGTCCGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCTTGGATTTTGGCCTTCACG
TTGTCGATCGTGTCGGAGCTCTCGACCTCGAGTGTGATCGTCTTGCCGGTTAGAGTCTTAACGAAGATCTGCATCTTGTTTGGCTAAATAGAAAATCGAG
AAAGAAAACTTCAATATACAAAGCAAACAAATTGCTTGAGAT