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Detailed information on CNT3032081


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 6e-160

BLAST vs NONCODE:
NONTPRT002153, E-value = 3e-95

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727318Theobroma cacaoCorchorus capsularis79.0461.7988.79705forward
CNT30609839Theobroma cacaoGossypium raimondii78.4874.3185.43700forward
CNT3051148Theobroma cacaoCucumis sativus77.1357.6783.58688forward

Expression of CNT3032081

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSRVMVLPVRVLTKICIPPRRRRTRWRVDSFWML*

>peptide 2 (41 aa)
SSKYANFIQKKALHKVEADRSKTYKFKFKGLNRARQHNPFT*

>peptide 3 (31 aa)
MVSELSTSKVMVFPVRVLTKICIPPRSLKTK*

>peptide 4 (73 aa)
MKCRLFLNVIISQSSTVLELLPSKDKPLLVWRDSFLVLDLGLHVVDGVGAFNFQGYGFTRQGLDKDLHPTTET*

Sequence

>CNT3032081
TAGCAGTAAATATGCAAATTTTATTCAAAAAAAAGCACTACATAAAGTAGAGGCAGACAGATCTAAGACTTACAAATTTAAATTTAAAGGCCTCAACAGG
GCCAGACAACACAATCCTTTCACATAAACCCAATCCAGTCCCATAGGGAGCTTAGAAACCACCACGAAGGCGCAAGACCAGGTGAAGGGTGGACTCCTTC
TGAATATTGTAATCAGCCAGAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGAATCT
TTGCCTTAACATTATCAATGGTATCCGAGCTCTCCACCTCCAAAGTAATGGTTTTCCCTGTCAGAGTCTTAACGAAAATCTGCATCCCACCACGGAGCCT
CAAAACCAAATGAAGTGTCGACTCTTTCTGAATGTTATAATCAGCCAAAGTTCGACCGTCCTCGAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCT
GGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTTTCAACTTCCAGGGTTATGGTTTTACCCGTCAGGGTCTTGA
CAAAGATTTGCATCCCACCACGGAGACGTAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCGTCCTCGAGCTGCTT
CCCAGCAAAGATAAGCCTTTGTTGGTCCGGTGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCGGAACTCTCGACTTCGAGG
GTGATTGTCTTGCCGGTGAGTGTCTTAACGAAGATCTGCATCTTGTTTGCGTGAACAGAAAACCTACAAAGTAAATATCAGAGAAATTAAAC