« Back to Gossypium raimondii search


Detailed information on CNT30606651


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2L949|YCF2_GOSHI, E-value = 5e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30531948Gossypium raimondiiEucalyptus grandis35.517.8988.57175forward
CNT30632183Gossypium raimondiiVigna unguiculata42.89.2884.36211forward
CNT30153751Gossypium raimondiiPrunus persica22.921.0492.04113forward
CNT3057834Gossypium raimondiiAmborella trichopoda22.727.5986.61112reverse complement

Expression of CNT30606651

Peptides detected in this lncRNA

>peptide 1 (43 aa)
LLFWSWNRLNKSKNEFLFKNEILLEPPSSSFRTISHPGSDKIG*

Sequence

>CNT30606651
TCCTCCTGTTCTGGTCATGGAATAGATTAAATAAATCAAAAAATGAATTTTTGTTCAAGAATGAAATCTTATTGGAACCGCCCAGTTCATCCTTCAGAAC
CATATCACATCCCGGATCGGATAAAATAGGATGAATTGAGACGGTATTTTGTAAATACGTAATTATCTTGAATATATTAACTATTTCTTTATTTTCCGAT
CGCTTGGAAAGGACAAAAGAAACATCTTGTTCTTTCTTCAACAATTTCTGATCTCTAGTGGACCTCTCAGTAGGGTTCGAACCCAGATGAAGTTCTGACC
ATATATTAGAGGAAAAAGAACGAATGGATCTTGTAGGGTTCCCAAAAAATTCTTCGATTTCTTCCGAAAGCAGATGATTATTTATCCGTTTCTCATGTTC
AGTAAATAGCTGAGACATTGAGGAATATCCAGAAAGGCACTTAGAGAATCGGTCTGATTCTATCTCCGTTTGTTCCGTTTGAAGAAAGGAAGG