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Detailed information on CNT30606495


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730237Gossypium raimondiiCorchorus capsularis33.7348.490.09454reverse complement

Expression of CNT30606495

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MLSRSLFLYNLHNPHYQSLMYFGVPNHPLVFCSIPCLFSNTYMGIHTKDSKNSIRLIFLARFKLD*

>peptide 2 (32 aa)
MVAVACDADGTCNERWWQQGWGWRVRRPCGAP*

Sequence

>CNT30606495
GGATCCTCATTGCGGGTCGGGTGAATTTCGGGTCTAAATGTTGAACGACGTCGTTTTGGCAACCAATATTAAGGTCCAAAACAGCGTCGTTTTATACCCT
ATATAAATCGTAAAAAAAAAAGAAAAAAAAAACTTCCAGCTTCATTTTTCCAAAAAAAAACAACAGAGAATAGTTTAGTTCTCTCTCAGCCCCTCCATCA
GACTGATAGGGCTGTCGCCTGCGCCGCCATGACCCCGTCGTAGACGGTGGCCGGAGCAGCAGAAATCTGGGTTTTTAACCCCGCTTCGACGACCGATTGA
AGGCCGAGCCTTCATTGCCGTAGGGCCGTGAGAAGAAACCCCAAACGCCACCCTTTTCGGTCCGATTTTGGTGACCCGAAAAACTCCGGTGACAACGCTT
GCGGGGCGATTCGGGTATGTTTCTTTCTCCGTTTCTTTTCTTTATTAATAGTTTCCTTTTAGAACAGATTTGTAATAAATAAATAAATAAAGTACAATTA
ATGGATAGATCGAAAAGAGAGGGAAAAAAAAAGAAGAAATAGGGCATTAACCTTCTGTTCTTTTATTTCCAATATTTTAAAGTGTCAGAAAAAATTACAA
GCCCTAGATCTCGGCTTTTATAGCCGATTTAACTACTTAGTTTTCTATTTATTTTGTCGTTTTGCGATTTGGATTTTTTCTGCTTGTTGGTTTCTTTTCT
CTTTGTTTTTTTCCTTTTTGTTGTTTCTGTTGGCGTGTTATGGGTGTTTTGCAGGTGCCAGACGTGCGTGAAGGAGGCCATGGTGGCAGTGGCGTGCGAT
GCTGATGGGACGTGCAACGAACGGTGGTGGCAGCAAGGCTGGGGCTGGCGTGTGAGGCGGCCATGCGGCGCGCCCTAAGATAGGAGGATACTCTGGACCA
GAATCATGGGGAGTACTGCCTAATCATTTCTACGAATTTAAAACCCCAATTAGTATTCTTTTTATGTTATCCAGAAGTCTCTTTTTATATAATTTACATA
ATCCCCATTACCAATCCCTTATGTATTTTGGTGTTCCTAACCATCCACTCGTTTTTTGTTCAATCCCCTGTTTGTTTAGCAATACATATATGGGAATCCA
TACAAAGGATAGCAAAAACTCTATACGGTTGATCTTTTTAGCCCGCTTCAAGCTAGATTGACTAATCAACCCGTCTTGGGGTAAAGACTTCTTCCGCTTA
CGTTTTCTTCCACTTAACTCTTGTACATGGGAAATGAGATTCTATTTTTTTTTGTTTAATTTACTGCGAATTTATAAGTTGCTTTCTTTCACTCATATAT
AACTATCTAATTTAGTTTATCAACTCAGCTTATTTTCTAGAACGAA