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Detailed information on CNT30730237


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30531958Corchorus capsularisEucalyptus grandis22.715.7286.85213reverse complement
CNT30273023Corchorus capsularisChenopodium quinoa14.2928.0985.07134reverse complement
CNT30569543Corchorus capsularisActinidia chinensis23.244.5584.4218reverse complement
CNT30146271Corchorus capsularisMedicago truncatula23.0342.6984.26216forward
CNT30606495Corchorus capsularisGossypium raimondii48.433.7390.09454reverse complement
CNT30716591Corchorus capsularisMalus domestica golden14.1822.3281.95133reverse complement
CNT30725282Corchorus capsularisLupinus angustifolius23.1335.6982.95217forward

Expression of CNT30730237

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSRQYSPRFRSRVCSYPPIKVITIRNEIILYYFLV*

Sequence

>CNT30730237
CGATTAGTTATGAAATACCACTAACTCTATGTGTTTTATCAATATCTCTATGTGCGATTCGTTGAAATAGAAACTTTTCTTTTCCCTATTCCTTTTGTTC
TAGAAAATAAATTGAATAGATATCTTCGTTTTTTATTATCCTTCAGGTTGATAAACTAAATTGGATAGTTATATATGAGTGAAAGAAAGCAGCTTATAAA
TTAGCAGTAAATTAAACAAAAAAATAAAGTCCCATTTCCTATGTACAAGAGTTAAGTGGAAGAAAACATAAGTGGAAGAAGTTCGTCCTTTACCCCAAGA
CGGGTTGATTAGTCAACCTAGCTTGAAGCGGGCTCAAAAGATCAACCGTATAGAGTTTTCGCTATCCTTTGTATGGATTCCCATACATGTATTGCCGAAC
GGGGGATTGAACAAAAAAAATGAGTGGATGGTTAGGAACACCAAAATACACAAAGGATTAGTAATGGAGATTATGTAAATTATATAGAAAGGATATTTAT
GGATAACATAAAAAGAATACTAATTGGGGCTTTAAATTAGTAGAAATGAGTAGGCAGTACTCCCCACGATTCCGATCCAGAGTATGCTCCTATCCACCAA
TTAAAGTAATAACTATCAGAAACGAAATAATCCTTTACTACTTTTTAGTTTAAGCCCCATTTGCGGTTTTCTCAGATCAGAAAGAAGAATAGGAACGAAA
AAGAAACAATAAAGAATAAAAATTTTTTTTTATTCTTTCTTTGATATATAGAGAGAGATCTAATTCGTGTCATGATTTATGAGCTAATGTAATGTTTCAT
TTTTTCGTAATCAAAACAATGGGTTGAAATATTTATTGATATTCCCACAACAAGTATTTTATTGAAGGCTTAAGTTATTACTCAACAAATATAAATTGAA
ATTTTTAAGGGGGCGAGATCAATTCAGAAGCACTTTTT