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Detailed information on CNT30605208


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2L917|ATPB_GOSHI, E-value = 2e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201078Gossypium raimondiiPisum sativum8.0327.9688.1459reverse complement
CNT30356905Gossypium raimondiiLactuca sativa11.9731.6584.0988forward
CNT30574483Gossypium raimondiiVitis vinifera35.6557.0880.92262forward

Expression of CNT30605208

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MRVSARFRWSHAILVHAFGLFPYSMKEFSSSTNLFSK*

>peptide 2 (62 aa)
LARGEGYIQYWTDDLRNTPQISFFKRGNSRNRSSRIYFHNKVKYANFVFQNYLIQKKSSTGG*

Sequence

>CNT30605208
ATCTTGCCCGGGGGGAAGGCTACATCCAGTACTGGACCGATGATTTGAGAAATACGCCCCAGATTTCCTTTTTCAAGCGTGGAAACTCCAGGAACAGAAG
TAGTAGGATTTATTTTCATAATAAAGTGAAATATGCCAATTTTGTTTTCCAAAATTATCTAATACAAAAAAAATCTTCGACAGGAGGTTGATCGGTTAAT
TCAATAAGAAATGAGAGTTAGCGCTCGATTTCGTTGGTCCCATGCAATTCTAGTGCATGCATTTGGATTGTTTCCTTATTCAATGAAGGAATTTTCAAGT
TCAACCAATCTATTTTCAAAATAGGTAGTGGATAAATAAATATTTTGGGAGAGTCTTTCATTTGTCCATCATTATAGGCAACACCATCCATATTATCTAT
GGAATTTGAACCCGAACTCTATTTATGATTCCTTATTTCTCTCTCATTAGCCTTGTTTCAATTTCATTTCGTATTTTATTTTAGCATATCGATTTTTTTT
TACTTTACGTCCAACCTCTCCCCACTTTTTCCATCTATATTCCTTTTTTTTTTCATTTCAGGGCCGAACTACGCCTGTTTTCACATCTAGGATTTACATA
TACAACATATATGACTATCAAGGGTGAATTTCTTATTTCTTATTATTGAGCTTATATATAATATATAATATATAATTTATATTAGATGTTAGAATATTAA
TTCTATTATATATTTATCTATTCTATTATATATAT