Detailed information on CNT30574483


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30615599Vitis viniferaSesamum indicum20.2636.992.4793reverse complement
CNT30539885Vitis viniferaBrassica napus21.7921.687100forward
CNT30237627Vitis viniferaBrassica oleracea22.228.0486.27102reverse complement
CNT30605208Vitis viniferaGossypium raimondii57.0835.6580.92262forward
CNT30356905Vitis viniferaLactuca sativa30.285087.77139forward
CNT30416813Vitis viniferaPapaver somniferum20.74.2687.3795forward
CNT30115345Vitis viniferaEutrema salsugineum23.0920.6687.74106forward

Expression of CNT30574483

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MGVSTRFRWYHPTESNSIVYLFNELIFKFNQAVFKMMNKIMKVFHLSIIIDNPIHILYGIRT*

>peptide 2 (46 aa)
MEFEPELYLRFIISISFLIDSYLFLISAYRFTPSLSLFFSFLYLFF*

Sequence

>CNT30574483
TCATAATAATAATAATAAAGTCAAATTAAACGAAATTTTTTGCGAAAATTATCGAATCCAAAAGTTCGATAGAAAGTTGATCGGTTAATTCAATAAGAAA
TGGGAGTTAGCACTCGATTTCGTTGGTACCATCCAACCGAATCCAATTCAATTGTTTACTTATTCAATGAGCTAATTTTTAAGTTCAACCAAGCCGTTTT
CAAAATGATGAATAAGATTATGAAAGTCTTTCATTTGTCTATCATTATAGACAATCCCATCCATATTCTTTATGGAATTCGAACCTGAACTCTATTTACG
ATTCATTATTTCTATCTCATTTCTCATTGACTCTTATTTATTTCTTATTTCAGCATATCGATTTACGCCTAGCCTAAGCCTATTCTTTTCTTTTTTATAC
CTTTTCTTTTAATGTTAATGGATGAATTCTTCATATTTTCACACCTAGGATTTACATAT