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Detailed information on CNT30602701


BLAST search results

BLAST vs Swiss-Prot:
sp|P18026|TBB2_MAIZE, E-value = 1e-116

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30196749Galdieria sulphurariaPisum sativum14.6538.7182.69156forward

Expression of CNT30602701

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MHGESAVVRLYYCIRDLWRRNHRVGAHHSVRIFFSNF*

>peptide 2 (37 aa)
MQKCLATKHSSKLFTHSLKKFLYRCGISNERCRLFHP*

>peptide 3 (36 aa)
MLLSASVNSISSIPSPVYQCKNALRRNIAVNCSPTL*

Sequence

>CNT30602701
CATGACTCTCCGTCATGCACTCCAAACTCCTCGTGTCAGATATGTTTGAGTAACCAGGATTACCTGCACCTTTAAGCGTGAGACAAAAATAGAAGCTTCC
TCATAGCAGTGTTTTGAAAAAAGTAGTCTATTGTTACCAACTTGCACTACAGTTAACTCCGTACAACAACTCTTTCACAATCTAGTTAACGAATAGATAT
TGTGGCTGCAAACAGAGCACAAATGGATTACTACCAACAGGTTTCTTTTATTCAAGCACTTAAATGGCTATTTTAAAAGGCCTCCTCTTCTTCGAGGCCC
ATATCGAAGTCATCTTCAGCAGTGGCTTCTTGATATTGTTGGTATTCTGATACTAAATCATTCATGTTACTTTCAGCCTCTGTAAATTCCATTTCATCCA
TTCCTTCACCAGTATACCAATGCAAAAATGCCTTGCGACGAAACATAGCAGTAAATTGTTCACCCACTCTTTGAAAAAGTTCTTGTATAGATGTGGAATT
TCCAACGAACGTTGCAGACTTTTTCATCCCTGAGGGAGGAATATCACAGAGTGAGCTTTTAATGTTGTTGGGAATCCATTCTACAAAACATGTTTCCACG
GAAATATGCAGCTGCAGTTAAATAACGACCATGACGAGGATCACATGCTGCCATCATATTACGGGAGTCAAACATTTGCTGAGTAAGTTCTGAAACACTG
GCAGATCGATATTGCTGTGATCCTGGTGAACTTAAGGGGGCAAATCCAATCATAAAGAAATGAAGCCTTGGAAATGGAATCAAGTTAGTGGCCAACTTTC
GTAAATCTGCATTCAACTGTCCAGGGAAGCGTAAACTAGGGCTGCTAATTTTTAAGGTACGAAGGCAAATGTCATAGAGTGCTTCATTATCAATGCAGAA
AACTTCATCAGCATTTTCCACCAATTGATGCACGGAGAGAGTGCAGTTGTAAGGCTCTACTACTGTATCAGAGACCTTTGGAGAAGGAACCACCGAGTAG
GTGCCCATCATTCTGTCAGGATATTCTTCTCGAATTTTTGATATCAAAAGAGTTCCCAAGCCAGA