« Back to Arabidopsis lyrata search


Detailed information on CNT3060122


BLAST search results

BLAST vs Swiss-Prot:
sp|P49168|RR12_PINCO, E-value = 4e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30235691Arabidopsis lyrataBrassica oleracea71.1357.7694.09372forward

Expression of CNT3060122

Peptides detected in this lncRNA

>peptide 1 (47 aa)
SLLITKRIIPMYKKNSNGFCYSNLPHHYFLLGIFLCFERRNSLDIKK*

Sequence

>CNT3060122
CTAGTCTATTAATAACCAAACGAATTATTCCAATGTATAAAAAAAATTCCAATGGCTTTTGCTACTCTAACCTTCCCCACCACTATTTTTTGCTAGGTAT
TTTCCTTTGCTTTGAAAGGAGAAATTCCCTTGATATAAAAAAATAGAATTGGATAAATAGTGGGTTCCATCGTTTCTATGGTTACTTCTAAAACGTCTAT
GATCTAAACGAGTCGCACATACACCCGAGTACATGTTCCTCGTCGCTGAGGGCATCCCCGAAGCGCTGGGGATTTCGTGACGTTTCGGATTGGCTGTCTT
GTATTTCTAATAAGTTGTTTAATGGTTGGCATACGGAATCATATAAATAATGGGCTGGTTTAGATTAGTTCTAACCGGCTAATTCTGAATTACTTCTCTT
CAAGATTCTCTTCAATATTTTTTTATATTGAAGAGAATATGAAACTAAACCTTTAATCTAAAAAGATATAAAATTAGAAATTGTAGATTTGCATGAAATC
GCTCCTATTTTTTATTGAACCGC