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Detailed information on CNT30600938


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30488170Fraxinus excelsiorOlea europaea33.3317.8980.2197reverse complement

Expression of CNT30600938

Peptides detected in this lncRNA

>peptide 1 (29 aa)
RSLEGKKCLCLLVQISGRKEKMRVLVNFM*

>peptide 2 (30 aa)
MVFICSLILVLNLFCFSVMLKFACLVWLIS*

>peptide 3 (32 aa)
MCICNSWLTCVVSIAASLKYPIMQWSTAYCGG*

>peptide 4 (44 aa)
MNLFDKSDLQYGIYLQFDFGAELILFQCDAEVCVFSLVNQLNSV*

>peptide 5 (44 aa)
MIHKMGHSENRTRDLSHLTSRTQSENHTTRPNALMYMVTLFLGS*

Sequence

>CNT30600938
CAGATCTCTGGAAGGGAAAAAATGCCTGTGCTTGCTAGTTCAGATCTCTGGAAGAAAAGAAAAAATGCGCGTGCTGGTTAATTTCATGTGAAGCTGGGCA
AGGAGGGACAAGAGGCTGAAGTTTCACTGTTGATTTTCATACATTCACCTCTTGCCACACAGATGTGCATATGTAATTCCTGGCTGACGTGTGTTGTTTC
AATAGCTGCTTCTTTGAAATACCCTATTATGCAATGGAGCACAGCGTATTGTGGAGGTTGACTAGGAAATAAAAAAGTGCTTTGTGGTTGACTAAAATGA
TTCATAAAATGGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCACCTGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCTGAT
GTACATGGTTACTTTGTTCCTTGGATCATGAACTTGTTCGACAAGTCTGACCTGCAGTATGGTATTTATTTGCAGTTTGATTTTGGTGCTGAACTTATTT
TGTTTCAGTGTGATGCTGAAGTTTGCGTGTTTAGTTTGGTTAATCAGCTGAACTCTGTTTGATGTCGATCGTGCAAGACATTAATGTTAAT