« Back to Arabidopsis lyrata search


Detailed information on CNT3060042


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 5e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3040427Arabidopsis lyrataMarchantia polymorpha24.2915.5386.27102forward

Expression of CNT3060042

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MFTQSKGKLTGEAWWLVGNETDALHLTASGYSFLHSSTSFNT*

Sequence

>CNT3060042
TTTCATTTTGTTCATATGCAATTCAAATTGAAAGACTTATAGAACATTACATATTTATTTCATCAGACAGTTGAGAATCCGATAGAAAATGTCTCGCAAA
CCGGAAAACAAACGTTAAATCCGGAAATTAAAACCCATAAAAAAAGAAGAAGAAAAAAAGCAGAAGAACAAGGGATAAAATCAAAGGTGGGGGATAATGT
TTTGATGTTTACACAGAGCAAAGGGAAATTAACCGGTGAAGCTTGGTGGCTTGTAGGCAATGAAACTGATGCACTGCACTTGACGGCTTCAGGGTACTCC
TTCTTGCACTCTTCCACTTCCTTCAACACTTGAGCGGAGTCGGTGCAACCGAACAAGGGAAGCTTCCACATTGTCCAGTACCGTCCATCGTAGTATCCGG
GGCTGTTACCGTGCTCACGG