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Detailed information on CNT3040427


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 7e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3060042Marchantia polymorphaArabidopsis lyrata15.5324.2986.27102forward
CNT30605276Marchantia polymorphaGossypium raimondii14.6124.390.6296forward

Expression of CNT3040427

Peptides detected in this lncRNA

>peptide 1 (36 aa)
CSHMHFGPSGPRSEAFSWQFTVAWTRSLKHKKFQVG*

>peptide 2 (38 aa)
VAICISDHQVPGPKHSAGNSQLLGPVLSNIKNFKSANL*

Sequence

>CNT3040427
CTGTAGCCATATGCATTTCGGACCATCAGGTCCCCGGTCCGAAGCATTCAGCTGGCAATTCACAGTTGCTTGGACCCGTTCTCTCAAACATAAAAAATTT
CAAGTCGGCTAATTTGTAGTGCCCTGAGAGAGCATACAATGATCTACTTGTCGGTGGGCTGGTGGACGATGAACATGGCGCATTGCACCTGCCTGGTGTT
GTCGAATCCCAAGCACCTGATGTAGCACTTGTGTCCGTACAACTTCTTGCACTCCTCAATCTCCCTCAACACTGAAGCAGAGTCGGTGCATCCGAACATG
GGCAGCTTCCACATGGTCCAGTAGCGACCATCGTAGTATCCGGGCATTCTGCTTCCCTCACGGGTCACGGCTCCTTGCTGCAGAACAGACAATGACAACA
GGACCGGTAAAAACCACGCCCTCGAGCTGATCTCATCTTCAAAACTTATGCATACACTTCGCGGTCCAGCACTAACAGACGCAAAGAAAATGTTCAAATG
AAGAACTAATTTGATGAAGAACTTACGGTGTCGAACTCAATGCAGGGAGCCCAGCCGGACTTGATGACGTAGTCGATCTGCTTGGCCAGAGCATCCTGGC
TCAGAGCGGGCAAGTAGGACAGCGTCTCGAACCTCAGGTTGTTGTATGGCTCCCACA