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Detailed information on CNT3059778


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371697Arabidopsis lyrataArabidopsis thaliana34.4461.2985.38342forward
CNT30478218Arabidopsis lyrataArabidopsis halleri67.2774.9794.61668forward

Expression of CNT3059778

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MLDKFLLWREVSRSLENRYSLKRESISGALCVSSS*

>peptide 2 (33 aa)
MWKPYFGDTPAPLVRFQQLILKNDDVSNHNYIC*

>peptide 3 (33 aa)
CIIRCPVDLLIHEAPAHQLFDKSPKPKTFAYSD*

>peptide 4 (29 aa)
MRFFFLGGHVFALQCFCSSFFVNLDACST*

>peptide 5 (30 aa)
MTMSPIITTFVDELPWTPGTLNHIPRRSIV*

Sequence

>CNT3059778
ATTGTATTATTCGTTGTCCGGTTGATTTGCTGATTCACGAGGCACCCGCCCACCAGTTGTTCGACAAAAGTCCTAAACCAAAAACTTTCGCCTATAGCGA
TTAGAGTGTGTCCACCTGAAATGTTGGATAAATTTCTTCTTTGGCGTGAGGTTTCGCGGAGTTTGGAGAATCGTTACAGCTTAAAGCGAGAATCAATCAG
TGGCGCGTTATGCGTTTCTTCTTCTTAGGTGGGCACGTATTTGCTCTTCAATGCTTTTGTAGCTCATTCTTTGTGAATCTGGATGCTTGCAGTACATGAT
GGTCCTCTCTATATGAAGGGTACTGGTTGAAAAGATTTATTGATGGGACGTGAAATAGCGGAAATTTAGTCTTGGGGGGTTTGTTTACCTTTTGAGGATT
CTATTCGTGATGAAGCTGGCAACATGCACTCATTCGTTGTGATCGGGCTGCTTACAAAACTTGATCCTATGTGAAGATTACTGGTTAAGATTTATTACTT
TGGATGTGAAAGAGCGGAAATTTACTCTTTGAGGATTTACCTTTCAAGGATTCTATTCGTGATGAAGCTGGCAACATGCACTCAATCTTGATGTATTTGG
CGAACTGTATGAAGTTTACTGGTTAAAAAGACTAATATACTAATTGGACGTGAAACAACGAAGGGAGGTGTTTCTATTTGAAGAGATCAAAGTTATTAGA
TGTGGAAGCCATACTTTGGTGATACACCAGCTCCCTTGGTTAGGTTTCAGCAGTTGATCTTGAAAAATGACGATGTCTCCAATCATAACTACATTTGTTG
ACGAACTTCCCTGGACTCCAGGGACCCTGAACCACATACCGAGAAGGTCTATTGTGTGACATTCTTCAGGTTCTGAAGGAGCTCGGTATAAAGAGGGAAG
AAAGCAAGCGTCATTGAGGAACCATACCTAATACTGATCACTATAGGTGCCAACTCTAGAGAAAGGACAGTTAAAACTTATTTTTGTTTAAGC