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Detailed information on CNT30478218


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3059778Arabidopsis halleriArabidopsis lyrata74.9767.2794.61668forward

Expression of CNT30478218

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MTMSPIITTFVGQLPLTPGTLNHIPRRSIV*

>peptide 2 (40 aa)
TDVSVSIGFIRYPIDIVIHEAPAHQLFDEIPKPKYFAHRD*

>peptide 3 (68 aa)
MRHPPTSCSTKFLNQNISPTEIRLSPPELWDQFRLLREVSRSLEDQWSVMRLFYLCGSFFVNLDAYST*

>peptide 4 (63 aa)
MWKPYFGDTPVPLVRFQKLILKDDDVSNHNYICWPTSLDSRDPKPHTEKVYCVTFFRFLRSSV*

Sequence

>CNT30478218
AACAGATGTGAGCGTATCCATTGGATTTATTCGTTATCCGATTGATATAGTGATTCATGAGGCACCCGCCCACCAGTTGTTCGACGAAATTCCTAAACCA
AAATATTTCGCCCACAGAGATTAGATTGAGTCCACCTGAATTGTGGGATCAGTTTCGTCTTCTGCGCGAGGTTTCGCGGAGTTTGGAGGATCAGTGGAGC
GTGATGCGTTTGTTCTACTTATGTGGCTCATTCTTTGTGAACCTGGATGCTTACAGTACATGATGGTCCTCTCTATATGAAGGGTACTGGTTAAAAAGAT
TTATTGATGGGACGTGATATAGCGGAAATTTAGCCTTGGGGGTTTCTTTACCTTTTGAGGATTATATTTGTGATGAAGCTGGCAAAATGCACTCATTCGT
TGTGATCCGGCTGCTTATAAAACTTGATGGTCCTCCCTATGTGAAGATTACTGGTTAAGATTTATTACTTTGGATGTGAAAGAGCGGAAATTTACTCTTG
GGGATTTACCTTTCGAGGATTCTATTCGTGATGAAGCTGGCAACATGCATTAAGCTCAATCTTGATGTATTTGGCGAACTGTATGAAGTTTACTGGTTAA
AAAGACTAATATACTAATTGGACGTGAAACAACGAAGGGAGGTGTTTCTATTTGAAGAGATCAAAGTTATTAGATGTGGAAGCCATACTTTGGTGATACA
CCAGTTCCCTTGGTTAGGTTTCAGAAGTTGATCTTGAAAGATGACGATGTCTCCAATCATAACTACATTTGTTGGCCAACTTCCCTTGACTCCAGGGACC
CTAAACCACATACCGAGAAGGTCTATTGTGTGACATTCTTCAGGTTCTTAAGGAGCTCGGTATAAAGAGGGAAGAAAGCAAGCATCATTGA