Detailed information on CNT30594947


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30110673Eragrostis curvulaOryza longistaminata10.5638.3886.54104reverse complement

Expression of CNT30594947

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MIRVDCFCYKPFYSGPWLLTDSYLLNLTEASVMSSWTGGWRRNPANVGLA*

>peptide 2 (53 aa)
SGTHLLASLGTQNPFQSGKNKRNGIVSIFLCYKGYYFHGFALVSCSYCRRRTE*

>peptide 3 (60 aa)
MHASLWKNCCHDLHPDQPSGKMESAEREDRLYEYLCTYYFGQVIAEVIGSCYFENGKQDC*

>peptide 4 (72 aa)
LVRICLLLSVLRIPSNPVKIRGTALCLFFFAIKGTIFMGLPWYHVHTVVVVLNDPGRLLLLQTFLFRSVATY*

>peptide 5 (80 aa)
MAGIVSEVLLLNCETIDGMSGGPVVDSRGLVGMNIKVTPTKNPVIMAVSSSSIIQFLKVAAGLHRNARITMEELLSRLAP*

Sequence

>CNT30594947
ATCTGGTACGCATTTGCTTGCTTCTCTCGGTACTCAGAATCCCTTCCAATCCGGTAAAAATAAGAGGAACGGCATTGTGTCTATTTTTCTTTGCTATAAA
GGGTACTATTTTCATGGGTTTGCCTTGGTATCATGTTCATACTGTCGTCGTCGTACTGAATGATCCGGGTCGATTGCTTTTGTTACAAACCTTTTTATTC
CGGTCCGTGGCTACTTACTGACAGTTATCTACTGAATTTGACTGAAGCGAGTGTGATGAGCTCTTGGACTGGAGGGTGGCGGAGAAACCCGGCAAACGTA
GGTTTGGCCTAATGGCAGGTATCGTGAGTGAAGTCCTATTGCTCAACTGTGAAACCATTGATGGCATGTCAGGTGGACCAGTAGTTGACTCGCGCGGCCT
CGTTGGCATGAATATCAAAGTGACGCCCACCAAAAATCCCGTAATCATGGCCGTCTCATCCAGCTCAATCATTCAATTCCTCAAGGTGGCTGCCGGTCTC
CACAGAAATGCACGCATCACTATGGAAGAACTGCTGTCACGACTTGCACCCTGATCAACCCAGCGGGAAGATGGAATCAGCTGAGCGAGAAGATAGGCTG
TACGAGTACTTATGTACTTATTACTTTGGCCAAGTCATTGCAGAGGTTATAGGTTCATGTTACTTTGAGAACGGAAAACAGGATTGTTAGACAAGTTGTA
GTCCTGTTTCCTTGGATCTTGGGGATTTGTTAACTACAACTGCTATGTCTTGGTGACAAAATAGACCACCTGCGTAAGTTTTTGTAAGCTTGAATAGAAG
GCTCGGGAGCAAGTCTTTCGAGGAAATTCCTTTTAAAACTTATCAAGGGGCAAATGCTATTTCTAGCATTTTCACATTGCTTAGTTTCATAGTACATTCA
GAACAATTCAGTGAGGAGTAAGACAATGCCACGCAGTAACGTACGAGAACATACACTTATTGCCTGACCCATCTTGTCAGGTCTA