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Detailed information on CNT30592635


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30226086Musa acuminataHordeum vulgare25.194.3585.71231forward

Expression of CNT30592635

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MSPPSRIPSPRTSGFTGTTKESHADVTVTDISPTTKTPVVLLVSIP*

>peptide 2 (30 aa)
SGAESHEFPYSILAVGLHLAQPNLSPLKRQ*

Sequence

>CNT30592635
GTTCGGGTGCTGAAAGCCATGAGTTCCCATATTCCATATTAGCGGTGGGCTTACACCTCGCCCAACCGAATCTAAGCCCTTTGAAGCGCCAGTAGTTGTT
GCTGTGGCCACACCAACCCTTTAGTTCCACTCGCTCCTTACTTATTTATATAGAACCTCCGGGCAAAGTAAACCTATTCTGTAGAGGCAGAGTAAGCTAA
CCTTAAGGAGTCGGGGGAGCCCTCAACTTGAGAAATCTCTGTGCGTGACGTGAGTAGGAATCCTAGAGAAGATAGATCGATTGAGACTAACTACCGTTCT
AAGATATCTGCAGCGAGCAGCTGAAACTAAGGTAAGCTCTGAATGAAGGCCCTAAGAGTTGATCGTGTCATGTGCAATGTCCATCAATGCTGGTTCATTA
ATGTCCATTGAATTAGACTCCTTCTCCCTTCCCTAATACGAAAAAGAACTGAAAGAGAAAACTAGAAACTCACTCTCGTATGGCTAGAGCCCTGGGCGGG
TTATTTTCCCTGTTGTTCTGTTCCCGCCACGATAAAGACGCACGGAAGAGGTATGCCCTGTAGAGGATCCGTTGAGAGTGTGAGTTGAAGACCTGATTGA
TAGATATAACAGCGCTACCGCCATGAAGACATAGTTGCTTGGTGGCTTGAAATACAGGTAAGTGTTAGAGTTTGCTCCTAGCGCCTAACTCAATTTGGTC
TTTCGCTTTTGCAGGATCTATAGAGATATTATGAGTCCTCCGTCCCGGATTCCCTCGCCTAGGACATCTGGGTTCACCGGTACTACCAAAGAGTCTCATG
CTGACGTTACTGTGACTGATATATCTCCGACCACGAAGACCCCAGTCGTGCTTCTGGTTTCCATTCCATAGAAATATAGAGGACAACTTCTCGTGCTCTG
CCATAAGAACTTGGAGT