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Detailed information on CNT30585154


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693046Echinochloa crusgalliOryza sativa41.1435.5292.31130forward
CNT30676260Echinochloa crusgalliSetaria viridis31.3330.7596.9799forward
CNT30523704Echinochloa crusgalliSetaria italica41.1435.7197.69130forward
CNT30352741Echinochloa crusgalliEragrostis tef51.5825.8394.48163reverse complement
CNT30366281Echinochloa crusgalliSorghum bicolor23.7316.2794.6775forward
CNT30551083Echinochloa crusgalliOryza brachyantha49.6825.0885.35157forward

Expression of CNT30585154

Peptides detected in this lncRNA

>peptide 1 (46 aa)
LIQSFITLFNTGLEHQWFREQHAYRQCGNNPNLPTRRISNYSYCVP*

>peptide 2 (82 aa)
MPTGSVETIQTFRLGGSAITPTAYHNTSSGAAHTLGEDDEVPRGDLHELLTVALRVNLHLPLEQVARLLGRVGPRELALLAPP

Sequence

>CNT30585154
CGCTAATCCAGAGCTTTATTACGCTGTTTAACACTGGACTGGAGCATCAGTGGTTCAGAGAACAGCATGCCTACAGGCAGTGTGGAAACAATCCAAACCT
TCCGACTCGGCGGATCAGCAATTACTCCTACTGCGTACCATAATACATCGAGCGGTGCAGCTCATACCCTTGGGGAAGACGACGAGGTCCCCCGCGGCGA
TCTCCACGAACTCCTCACCGTGGCCCTCCGGGTAAACCTTCACCTTCCCCTGGAGCAGGTAGCACGTCTCCTTGGCCGAGTAGGTCCACGGGAACTTGCT
CTTCTCGCACCCCCAC