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Detailed information on CNT30582855


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 7e-105

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30604596Echinochloa crusgalliOryza punctata2244.0391.25343forward

Expression of CNT30582855

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MAWTKNPNMENMARRPFLSSLTLSSAKASGSSARWRGCSARGSGSGCRGSQGRPR*

>peptide 2 (49 aa)
MVTRASPKRDDGTLTALPANAVEERAMVLVAIALQTPRCLVLYAGVSETR

>peptide 3 (37 aa)
MVQTETSARSHPNTLQHVSTSNSLGSTPHLPGTKLVA*

>peptide 4 (29 aa)
MAQREWMTSSSRFLAKVSGSADSPAVSQP*

Sequence

>CNT30582855
TATTAGTAGAATGGGTTGCACAGGCCACGGAAACAAAAAATCTAGAATTATAAAGGGGCTAGAGGTAGGTTAGCTCCCGCGTTATTTGAACGTTTAGGGG
CTAGGTTCTCAAAAATTTAGAATTATGTAACCACAATATTGACGTCCTGAAAAGTTCAAGTGTTCAACATAGTTCTACGGTGTTAGCGCCACGACTTCCA
TCAGGTAATAAGCAGATGTCTGAAGTGTAATTCAGCATACAGGAAACGTACGGCAACGGAGCAGATAAATATCCTTTTCGAGTTTTCGTATCCCCTAGTA
TGATCTGTGGATTAACCAACACTGTGATGCAGTAATCTCTCCGTTGCTGCATCTAGCATAGCATCTAGAACTCTCCTCCGTCAGTCCCAAATTATTGTAG
GCTAATGGAGTAGGAATTCTTGATCATCTAAACATCCTAACATATATTCCATTAGCCTCGCTCTCCACAACCAAACGGCGTCAGCTTCGTCGCCCTTTGT
CCACTCTCGAAGCGGAAAACACTGCAAATTTCAGGGTGCCTTTGTCTGGTTAGCACACTCCAGCACAACAAATCCCATCGCGAGCAAAATCACTGGCTCT
TCAGGATTTACCGACCAGGCTCTGGGTTGTGCACGCACACGGTTGCTCAAGCAAATCGACGGTGGAAAGGAAAGAAAAAAAGACGAGCTGGGTTGGACGG
GATACAATACAATCAGACAATGAACACTGCAAATCCTTCTCCGTTGAACCCTCGTAATTTACACCATGGTACAAACTGAAACCAGTGCGCGCTCACATCC
GAACACCCTACAGCACGTCAGCACATCGAACAGTTTGGGATCAACGCCTCACTTGCCGGGCACGAAGTTGGTGGCGTAGGCCCAGGCATTGTTGTTGACG
GGGTCGGCGAGGTGGTCGGCAAGGTTCTCGAGCGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAATCCGAACATGGAGAACATGGCGAGGCGGCCGT
TCTTGAGCTCCTTGACCTTGAGCTCAGCGAAGGCCTCTGGGTCGTCGGCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAG
TCAAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGC
CGAGCGCGCCGAGCATGGCCCAGCGGGAGTGGATGACCTCCAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGACAGCCCGGCGGTGTCCCAGCC
GTAGTCGCCGGGGAACTCGCCGGTCAGCGGGCCGAGGTAGAGCACGCGGTCTGGGCCGTACCACGGGCTGCCGGAGGCGGCCGGCTTGGGCTTCGCCGCG
GTCTTGCGCATGGTCACGCGGGCCTCGCCGAAGAGAGACGATGGCACGTTGACGGCCTTGCCGGCGAACGCCGTGGAGGAGAGGGCCATGGTGCTGGTCG
CCATTGCGCTGCAAACACCGAGGTGTCTTGTGCTCTATGCAGGGGTGAGTGAGACTCGC