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Detailed information on CNT30578146


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30104073Oryza barthiiOryza rufipogon61.1663.8297.67515forward

Expression of CNT30578146

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MREISRRGGASSRRWTPRRSCGPSSSRGARGRRSRRRRPPPWPRSPP*

>peptide 2 (29 aa)
KIYSTLMVFQIEWRKSRFDRYCFTCTKYR*

>peptide 3 (84 aa)
MTRREPCTPLIWTHRGQGCRENQATQAELTAPPVSLSLVEAGDSCEKQQHHASRRRQIITHTNRRHGGRRRTARSSSPPTTTWR*

Sequence

>CNT30578146
CTAAAATCTACTCAACTTTAATGGTTTTTCAAATAGAATGGAGAAAGTCAAGGTTCGATAGATATTGCTTCACTTGTACAAAGTACAGATAAAAATACAT
TGATACATGACACGGAGAGAGCCATGCACACCACTTATTTGGACACACAGAGGGCAAGGCTGCAGAGAAAATCAAGCAACACAAGCTGAACTCACGGCCC
CACCTGTCAGCCTCTCACTGGTCGAGGCCGGAGACTCTTGTGAAAAACAGCAACACCACGCAAGCAGAAGAAGACAAATTATTACACACACAAATCGACG
ACACGGCGGCCGGCGACGTACGGCGAGGTCGTCGTCGCCGCCGACGACGACGTGGCGATGAGAGAGATCAGCCGAAGAGGTGGTGCTTCTTCTCGCCGGT
GGACTCCTCGGCGCTCTTGTGGTCCTTCTTCTTCTCGTGGTGCTCGTGGAAGGCGTAGCCGCCGGCGCCGACCGCCGCCGTGGCCGCGATCTCCTCCGTG
ATCTTGTGCCTGTGCGCGTTCTCCGGGTCCTTCTTCGCCTCGTGCTTCTCATACTACACACCACGATTAATCAGCTTAATTAATTACTTCTTGATGATTT
CTTAGCAAATTAATTGATTAATTAAGGCGGCGTTAGATCAATTAATTAGTGGTTAATTAATTAGTTAATTACCAGGGCGAAGGCGCCGGCGGCGAGGGCG
CCGGCCTCGCCGAGGTGCTGCTTGTGGTGGTGGTGCTTCTCCTCCGCCATGGCTAATTAATTAATTAAGCTAGCTAGAAGCTAGTGATGACAATTAGGAG
AATGAGATGGAAGTGACAATAAGATGTGGCTTTGCTTGCTTG