Detailed information on CNT30575149


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552705Oryza barthiiOryza glaberrima38.095193.3179forward
CNT30100307Oryza barthiiOryza rufipogon43.6254.9697.07205forward

Expression of CNT30575149

Peptides detected in this lncRNA

>peptide 1 (98 aa)
DLGLPLEGPVAVGLVVGGPLDLPAGGFGLVGVLAAWGGELKRGDAVGEGVVEKEGIAEGGAGGGYRWGRGWEEEVEVEVEMVVEGGVEVVGGGETEWA*

>peptide 2 (57 aa)
MRRREGRKMGGCRRGGRRRRRLGRWGRKGGRRRRGSGRGGGCPPWLMAFVQVLAVWTV

>peptide 3 (30 aa)
SIWASHLKVRSPSGLSWVVHLIFLPADSAS*

Sequence

>CNT30575149
TCGATCTGGGCCTCCCACTTGAAGGTCCGGTCGCCGTCGGGCTTGTCGTGGGTGGTCCACTTGATCTTCCTGCCGGCGGATTCGGCCTCGTAGGTGTACT
TGCTGCGTGGGGCGGCGAGCTCAAGCGCGGAGACGCGGTGGGCGAGGGAGTGGTGGAGAAGGAAGGGATCGCGGAGGGCGGGGCAGGAGGTGGTTACAGG
TGGGGTCGGGGTTGGGAGGAAGAGGTCGAGGTCGAGGTCGAGATGGTGGTGGAAGGCGGCGTCGAGGTCGTAGGAGGAGGTGAAACCGAGTGGGCATGAG
GAGGAGGGAGGGAAGAAAAATGGGTGGGTGTCGTCGAGGAGGAAGGAGGAGGAGGAGGTTGGGAAGGTGGGGAAGAAAGGGTGGTCGTCGGCGGCGAGGA
AGCGGAAGAGGTGGTGGCTGCCCCCCATGGCTGATGGCGTTCGTGCAAGTCTTGGCAGTGTGGACTGTGA