Detailed information on CNT30574929


BLAST search results

BLAST vs Swiss-Prot:
sp|P14279|CB25_SOLLC, E-value = 4e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30440266Oryza barthiiAegilops tauschii40.4521.5297.52161forward
CNT30369213Oryza barthiiOryza glumipatula10049.7596.73398forward
CNT30603450Oryza barthiiOryza punctata107.5491.0688.55428forward

Expression of CNT30574929

Peptides detected in this lncRNA

>peptide 1 (57 aa)
NTHYRYRSHPLSNTRTSIHAVHTNTYIYTVHVRTSTAPRTHTHTLLQRRASSSTKLA*

>peptide 2 (55 aa)
IHTTGTDLTLSPILVHPSTRSTRIRTSIRYTYVHLLHRVHTRTLSCRDAHRRQPS*

>peptide 3 (38 aa)
MAWTKKPNMENMARRPFLISFTLSSAKASGSSARPSGSK

>peptide 4 (31 aa)
MRGHGSTAAAALTCRGRSWWRRPRRCWGPCR*

>peptide 5 (81 aa)
YTLPVQISPSLQYSYIHPRGPHEYVHLYGTRTYIYCTAYTHAHSPAETRIVVNQASLAEGDAWPWQHGGGGAHLPGTKLVA*

>peptide 6 (67 aa)
MAARRRRRSLAGDEVGGVGPGVVGALAGDDGLDEEAEHGEHGEAAVLDLLHLELGEGLRVVGEAERVE

Sequence

>CNT30574929
AATACACACTACCGGTACAGATCTCACCCTCTCTCCAATACTCGTACATCCATCCACGCGGTCCACACGAATACGTACATCTATACGGTACACGTACGTA
CATCTACTGCACCGCGTACACACACGCACACTCTCCTGCAGAGACGCGCATCGTCGTCAACCAAGCTAGCTTAGCTGAAGGCGATGCGTGGCCATGGCAG
CACGGCGGCGGCGGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCAGGCGTTGTTGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGC
CGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCGGCGAAGGCCTCCGGGTCGTCGGCGAGGCCGAGCGGGTCGAAG