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Detailed information on CNT30369213


BLAST search results

BLAST vs Swiss-Prot:
sp|P08222|CB22_CUCSA, E-value = 9e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671434Oryza glumipatulaSetaria viridis40.2541.8292.86322forward
CNT30188325Oryza glumipatulaSecale cereale5046.9590.25400forward
CNT30300806Oryza glumipatulaTriticum aestivum50.7549.6989.16406forward
CNT30664418Oryza glumipatulaTriticum dicoccoides3532.993.21280forward
CNT30574929Oryza glumipatulaOryza barthii49.7510096.73398forward

Expression of CNT30369213

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRYPSTAPMSTTCTAQIARMLCAWIKLGLPR*

>peptide 2 (75 aa)
MRGHGSTAAAALTCRGRSWWSARFSRGPLPVTMAWTKKPNMENMARRPFLISFTLSSAKASGSSARPSGSKLPPG*

>peptide 3 (41 aa)
MVMRPSPNTFAAALPASAGEERAMVAAAMSTSLAASSSAAAA

>peptide 4 (74 aa)
FIINSQHHISLIRFRTCTEIHTTGTDLTLSPILVHPSTRSTRIRTSIRYTYVHLLHRVHTRTLSCRDAHRRQPS*

Sequence

>CNT30369213
TTTTATAATTAATTCACAACACCATATTTCATTGATCAGGTTCAGAACCTGCACAGAAATACACACTACCGGTACAGATCTCACCCTCTCTCCAATACTC
GTACATCCATCCACGCGGTCCACACGAATACGTACATCTATACGGTACACGTACGTACATCTACTGCACCGCGTACACACACGCACACTCTCCTGCAGAG
ACGCGCATCGTCGTCAACCTAGCTAGCTTAGCTGAAGGCGATGCGTGGCCATGGCAGCACGGCGGCGGCGGCGCTCACTTGCCGGGGACGAAGTTGGTGG
TCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCA
CCTTGAGCTCGGCGAAGGCCTCCGGGTCGTCGGCGAGGCCGAGCGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGCCCGCC
GGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGCACCGCCCAGATCGCCAGGATGCTCTGCGCGTGGATCAAGCTCGGGTTGCCGAGGTAG
TAGAGCACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGCGGCGGGCTTGGGCTTCGCCGCCGACTTGCGCATGGTGATGCGCCCCTCGCCGAACACCT
TCGCGGCGGCCTTGCCGGCCAGCGCCGGGGAGGAGAGGGCCATGGTGGCGGCGGCCATGTCTACCTCGCTTGCTGCTTCAAGCTCAGCTGCTGCTGCTGC