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Detailed information on CNT3057048


BLAST search results

BLAST vs Swiss-Prot:
sp|P27518|CB21_GOSHI, E-value = 1e-98

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640611Amborella trichopodaNymphaea colorata43.6516.0985.71189forward

Expression of CNT3057048

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MDEIRISEVVEEFREDTAEGAEHGPPAVDHLQFSVFGEGFWVCREACGVPSVVSWELTCQV*

>peptide 2 (29 aa)
MDQRPHLGKLHPGPHLVGHHRPCTPQQIP*

>peptide 3 (29 aa)
MAHRQWITSSSRFLAKVSGSAERPAVSHP*

>peptide 4 (36 aa)
PILDLLHLELSKSLRVISQAQWIKGPTWVNCIQALT*

>peptide 5 (29 aa)
LPFLISFTLSSAKASGSSAKPNGSKAPPG*

Sequence

>CNT3057048
CTCCCATTCTTGATCTCCTTCACCTTGAGCTCAGCAAAAGCCTCCGGGTCATCAGCCAAGCCCAATGGATCAAAGGCCCCACCTGGGTAAATTGCATCCA
GGCCCTCACCTAGTGGGCCACCACCGACCCTGTACCCCTCAACAAATCCCATAAGGACAACCTGACAAGCCCAAATGGCCAGTATGCTCTGTGCATGGAT
GAGATTCGGATTTCCGAGGTAGTCGAGGAGTTCAGGGAAGACACAGCCGAGGGCGCCGAGCATGGCCCACCGGCAGTGGATCACCTCCAGTTCTCGGTTT
TTGGCGAAGGTTTCTGGGTCTGCCGAGAGGCCTGCGGTGTCCCATCCGTAGTCTCCTGGGAACTCACCTGTCAGGTATGAGGGGGTCTGTTCGGAGAAGG
GGCCCAGGTACTTCGGGCGGTCGGGGCCGTACC