« Back to Nymphaea colorata search


Detailed information on CNT30640611


BLAST search results

BLAST vs Swiss-Prot:
sp|P15192|CB22_PINSY, E-value = 7e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30482942Nymphaea colorataChara braunii17.9624.2884.36211forward
CNT3057048Nymphaea colorataAmborella trichopoda16.0943.6585.71189forward
CNT30498755Nymphaea colorataDigitaria exilis19.9140.9885.04234forward

Expression of CNT30640611

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MSLGPPTAPRCPSRSRRGILRSGMTAFARRMGRGISVCLVRT*

>peptide 2 (65 aa)
MGPLPVTMACTKKPNMENMASLPFLSSLTLSSANASGSSAKPSGSKAPPGYRASRPSPRGPPPTL*

>peptide 3 (34 aa)
MYDLQLPVLGECLWVRRQPRGVPAVVAGEFSGQV*

Sequence

>CNT30640611
GAGAGGAACAAGAAAAGAAGAGTAATTCATTTAATTGACAAGAGCTCAGCATTGAAGTACATGAAGGGACTGAGAGAAACTAAGTAATTTTTACACTCAC
TTGCCCGGAACAAAGTTGGTGGCATAGGCCCAGGCGTTGTTGGTAGCTGGGTCAGCCAAGTGGTCATAGAGGTTCTCAATGGGTCCCTTGCCGGTGACTA
TGGCCTGCACGAAGAAGCCAAACATGGAGAACATGGCCAGTCTGCCATTCTTGAGCTCCTTGACCTTGAGCTCGGCAAACGCCTCCGGGTCATCGGCCAA
GCCCAGTGGGTCAAAGGCGCCGCCCGGGTACAGGGCATCCAGGCCCTCCCCAAGAGGCCCACCCCCTACTCTGTAGCCCTCAACAAAGCCCATCAGCACT
ACCTGGCAAGCCCATATGGCCAGTATGCTCTGTAGTCAAGCCCACCCTCAGAGAAGATCTGAGCTCCAGCCTTGAACCACACTGCCTCCCCAAACTTCAC
CCCATTTTTAGCCAGTATCTCTGGGAACACACACCCCAGCGCGCCCAGCATCGCCCACCTTGCATGTATGACCTCCAGCTCCCGGTTCTTGGCGAATGTC
TCTGGGTCCGCCGACAGCCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAATTCTCCGGTCAGGTATGACGGCGTTTGCTCGGAGAATGGGCCGAGGAATT
TCGGTCTGTCTGGTCCGTACCTGAAATTCAAACACACACACAAACATGTTATATGTGGTGCATATTGTGTATGTATGAGTGCATGTGCATGAGTGGAATC
ACTGTCTCGGTTATGAGATTCATGGTGATGTGAGATTTTGGAATCTTAAATCCAAAGATTTCGGCTTCTGTATTTCCAACAAAATTTTGAAATTCGTATC
ATGAACTTGCATCAAGATCTTAAATTCACAGTTCTCAAATATGCAGTTTTCGAAAACCATAACTTAAAGTGAATCCCACCTACAAAAATCTTTTGAAATC
ACCCGCATAACATGATCATTTCATTCAGCTCTGTGAAGTGATCAATCTGCTGGAGTTGTTCTGGTTCTTCTTTTTTCCTTCTCATATTTGAGATATGTTC
TTTAGAAGGGCAGCAATGAGGGGCATGAGATTTGAAGTGAAACTACAAAGAGTTGAATCAAAGAAAGAAGAAAAC