Detailed information on CNT30563175


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30599437Actinidia chinensisFraxinus excelsior9.3836.7380.86162forward

Expression of CNT30563175

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MELNGDRKRCRKQAGSILEVVTAELMKTQLQLVQSVEFKQCPPEAKS*

>peptide 2 (43 aa)
MDRGGRWQRVSRSQRDGGERQRLGEVGLRWQVKGWERARRRCG*

>peptide 3 (42 aa)
MHCVTEVGMQEFIYWVKHTPLPVRCNNKWLYCCMGVQPALES*

>peptide 4 (33 aa)
ARRFFSEHSFYSQTTHHQPPKSQTLSLPTKYKP*

>peptide 5 (78 aa)
PVGFSQNTLSIPKLPTINLRSPKPSLYLQSTNPNPCYQCPAANCNTHLSTYHQQRRALSLPRASSPDSPPPPQSPGHP*

>peptide 6 (48 aa)
MTDDISIAYFAGKTVLSTTPLALMRICRAKAFICIVSQKWGCKSLYIG*

>peptide 7 (33 aa)
MREVNIECCFSKHFSSFAYATCKTCMHMESQQF*

>peptide 8 (31 aa)
MLPMPRRQLQHPPFYLPPTAPRALSPAGIIA*

Sequence

>CNT30563175
AGCCCGTAGGTTTTTCTCAGAACACTCTTTCTATTCCCAAACTACCCACCATCAACCTCCGAAGTCCCAAACCCTCTCTCTACCTACAAAGTACAAACCC
TAACCCATGCTACCAATGCCCCGCCGCCAACTGCAACACCCACCTTTCTACTTACCACCAACAGCGCCGCGCGCTCTCTCTCCCGCGGGCATCATCGCCT
GATTCTCCTCCACCACCGCAATCTCCAGGCCACCCCTAGAACACTAGATCTCTCGCTCTCGGAGATGGTTTCGCGGTGGCGACGGTAGGTATATCGCTGC
GGATGGACAGAGGAGGGCGGTGGCAGAGGGTTTCGCGATCGCAGAGAGATGGTGGTGAAAGGCAGCGATTGGGTGAGGTGGGCCTGCGATGGCAGGTGAA
GGGGTGGGAGAGGGCGCGACGGCGGTGTGGCTGAGGTGGTGTTAGGGTTAGGGTTACGATTAGGTCGGGTTGGGTGGTTAAAGAAAGGGTAGAATGGTAA
TTTGATAAAGGAACAAAACTTGCAAAAGAAAGATAGAGGGGTAAGAGACAGAGAGACAGAGACAGAGACCTTTTGGTTCAAGACAATGTGAGAGTGATTG
CAGGAGAGATTAGCTGGAAGTGCCTGTTCAGGGAAATTCCACTTCTTATAAATGACAGACGACATCTCCATTGCGTACTTCGCTGGAAAGACTGTTCTCT
CAACTACCCCGCTAGCATTGATGAGGATCTGTCGAGCCAAAGCGTTTATATGCATTGTGTCACAGAAGTGGGGATGCAAGAGTTTATATATTGGGTGAAG
CACACTCCATTACCTGTGCGTTGCAATAACAAGTGGCTCTATTGCTGCATGGGTGTTCAACCTGCACTGGAATCTTAAGCTTTCAGGAGTGAAGACTTGG
CTGGTGGTACCATGTAGGCCACCTTGAGGATGTGGTAAGTTCAACTCAATCGCCAATGGCTTCAATGTTCTGTCATCTCGCTGCAGCACGTGTTCTGCTG
GCGTAGGTCTTTGTGGGGGTTGCATTTATCCGTCTCAGGGTCAAATGGAGCTTAATGGAGACCGGAAGAGGTGTCGGAAGCAGGCTGGAAGTATTTTGGA
GGTTGTTACAGCAGAATTGATGAAAACCCAACTTCAACTGGTTCAATCAGTAGAATTTAAGCAGTGTCCACCAGAAGCCAAAAGCTGATAACTTCAACCA
GTAGAACTTGTTGTTCTACCGGTTGAACTTAGACAAACTCACCAGTGAAGAAAACCAACTTCAACCGATTGAACTTTTTGTTCTACCAGTTGAAAAGGTT
GTAGATGCGTGAAGTCAACATAGAATGTTGTTTTTCAAAGCACTTTAGTTCTTTCGCCTACGCAACTTGCAAGACTTGTATGCACATGGAATCTCAACAA
TTTTGAGGGAGCTTGAAGCCCAAGACACTTTTGTTTCGAGGGAATTCTTATCCTTAAAATTTTCCCCTTTTCCTACTTTTACACTTGTTCATTCCAAGTT
CATAGTTTTAGATTAGATTAAATTAGGGAGTTAGAGAACTTTGAATTAAAAATTGTAATTCTTGAATCTACCCTACTTTTGGTTTGAATGGTTGTAAGTT
TAACTTAACTCTTGTTTGATTTTGATTCATATTTTTGAATTTTCATTACTTGTTCATTCTTGTTATTCTTTCCTTTGGTTTAAGATTTTGTTTATCATTT
ATACTTGGATATTCCTATCCATTTGCT