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Detailed information on CNT30562224


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 3e-159

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30609150Actinidia chinensisGossypium raimondii67.6664.184.6682forward

Expression of CNT30562224

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MPSLSWIFALTLSMVSELSTSRVMVLPVRVLTKICI*

>peptide 2 (40 aa)
MVSELSTSRVIVFPVRVLTKICMPPRRRRTRCRVDSFCML*

>peptide 3 (40 aa)
MVSELSTSRVMVLPVRVLTKICMPPRRRRTRWRVDSFWML*

Sequence

>CNT30562224
CCACAAGAAACTGAACAACACCATCCACTGAACTAAAAGAAAAGCACAAACGATTTATTGATAACCCATGTTAGGGTAACACACAATACCAACTAAAATA
TAAAGAGAACCACATCACTCCAAATCATAGGGAAATCAAATAGAAGCCATGGACAGTTTTTGGAAACCACCACAGACAAGGTGAAGGGCCCTTGACTCCT
GGATTTTAGAAACCTCCACGGAGACGAAGCACAAGGTGAAGGGTTGACTCCTTCTGGATGTTATAATCTGCAAGGGTTCGGCCATCCTCGAGCTGCTTCC
CAGCAAAGATCAGCCTCTGCTGATCTGGTGGGATCCCCTCCTTGTCCTGAATTTTTGCCTTGACATTGTCAATGGTATCAGAGCTTTCAACCTCAAGGGT
AATAGTTTTTCCGGTGAGGGTCTTGACAAAAATCTGCATGCCACCGCGGAGGCGGAGGACGAGGTGCAGGGTCGATTCCTTCTGTATGTTGTAGTCTGCT
AGGGTGCGGCCATCCTCAAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATCCCTTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAA
TGGTGTCGGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATCTGCATGCCACCACGGAGGCGGAGGACGAGGTGGAGGGT
AGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGCCTTTGCTGGTCTGGTGGGATGCCTTCTTTG
TCCTGGATCTTTGCCTTGACATTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATCTAGA
GAGAGAGAGAGATTGATTAGAGATAATATAGATCTGATCTCTTCTTCTTGGGATTGCAATGTGAGGGAGAGATGTGAGATTAGGAGGGTATTTGTAGATG
GAGGTTTC