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Detailed information on CNT30609150


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 1e-156

BLAST vs NONCODE:
NONTPRT002153, E-value = 2e-100

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30275114Gossypium raimondiiChenopodium quinoa64.2997.7184.06684forward
CNT30380449Gossypium raimondiiManihot esculenta64.3869.9784.38685forward
CNT30562224Gossypium raimondiiActinidia chinensis64.167.6684.6682forward
CNT30723701Gossypium raimondiiLupinus angustifolius64.3839.0183.94685forward

Expression of CNT30609150

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MEREGVRRCLYRREGVDFLRLEGLEETRKLRSDESACSYVSHTVVFLRLAYATC*

>peptide 2 (52 aa)
MVSELSTSRVMVLPVRVLTKICIFGELIEKRFKKSLNRSALDGERGGEAMLI*

>peptide 3 (30 aa)
MVLPVKVFTKICIPPRRRRTRWRVDSFWIL*

>peptide 4 (61 aa)
MRRCWSGGMPSLSWILDLTLSMVSELSTSRVMVLPVKVLTKICIPPRRRRTRWRVDSFWML*

Sequence

>CNT30609150
ACGAAATCACCAAACTTTTATTCCAAACAGAAGGTTTACTTAGATTAACATGTTACATTCAGAGATAAGAAAATAGGCACTTTCCTAAAGGCTTATTTGT
GACCATCTTAAGCTAGAACAAAGACAGAAGAAGAATTAACTTCTCACTGCCCACCACGGAGACGAAGAACAAGGTGAAGGGTGGACTCTTTCTGAATGTT
ATAATCAGCTAAAGTCCTCCCATCCTCCAATTGCTTGCCAGCAAAGATGAGCCTTTGCTGATCTGGGGGGATACCTTCCTTGTCCTGAATCTTTGCCTTC
ACATTGTCAATTGTATCCGAACTTTCCACCTCCAATGTGATGGTCTTGCCGGTCAAGGTTTTCACGAAGATCTGCATTCCCCCGCGAAGACGGAGGACGA
GGTGGAGGGTGGATTCCTTCTGGATATTATAATCGGCCAGGGTACGGCCATCTTCGAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGTGGGAT
GCCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCGATGGTGTCGGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTTTTGACGAAGATC
TGCATACCCCCACGAAGACGGAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTTCCGGCGA
AGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTCACATTGTCGATGGTGTCAGAACTCTCAACCTCGAGGGTGATGGT
CTTGCCGGTAAGGGTTTTGACGAAGATCTGCATCTTTGGAGAGTTGATTGAAAAAAGATTTAAGAAGAGCTTGAATCGGTCTGCGTTGGATGGAGAGAGA
GGGGGTGAGGCGATGCTTATATAGAAGAGAGGGTGTGGATTTTCTTAGGTTGGAAGGTCTGGAGGAAACGAGAAAATTGCGGTCAGATGAGTCGGCGTGC
AGTTACGTTAGCCACACGGTGGTGTTTCTAAGATTGGCCTACGCAACTTGCTAATTCATTCTCG