Detailed information on CNT30554184


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004481, E-value = 2e-19

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670881Oryza glaberrimaSetaria viridis11.9960.6686.72128reverse complement
CNT30370504Oryza glaberrimaOryza glumipatula2546.4398.88267forward
CNT30105557Oryza glaberrimaOryza longistaminata57.466.6396.9613forward

Expression of CNT30554184

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MRLANSLESSSGKGWGCGIGIEIWMGWDATPPKNSNSIHLCC*

>peptide 2 (40 aa)
MQRWTAGVKRPFSPRFGVTDRWVPCQGSACVISPVDGRQQ*

>peptide 3 (50 aa)
MKWGLNYFSFLFPHFVHSFSSAVDVIDLHHFFLVCSKPRANICKYTSSGT*

>peptide 4 (48 aa)
MGVSSEQREASSRASARWARVGGGVSLTGGPGKSGVPGDATRHRRAAAA

>peptide 5 (37 aa)
MGCHTPQKFQLHSFVLLRPCLPVSHQMFRQNIDKIKN*

Sequence

>CNT30554184
CCTAAGTTCACGAGTTGGTGATGAGATTGGCCAACTCCCTTGAATCTTCCAGTGGCAAAGGATGGGGATGTGGAATTGGAATTGAGATTTGGATGGGATG
GGATGCCACACCCCCCAAAAATTCCAACTCCATTCATTTGTGTTGCTAAGGCCCTGTTTACCCGTGTCACATCAAATGTTTAGACAAAACATAGACAAAA
TAAAAAACTAATTACACAGATTGACTGTAAATTGCGAGACGAATCTTTTAAACCTAATTGTTTCATGATTTGATAATGTAATGCTATAGTAAACATTTGC
TAATGACGGATTAATTAGGTTTAATAAATTCGTCTCGTGGTTTACAGACAGAATCTGTAATTTATTTTATTATTAATCTATATTTATTCAAATGTATATT
CGTATATCCGATATGACACTCTAAAACTTTTCACCCCTGAATCAAAACACACCCGAGCCTATATATGACAATTCCGCAGTGGCTGGGAACAAAACATTCT
TTCTTCACCATCTTATTGGTAAGTACTTTGCCTTAGTGAACGAAATGAAATGGGGTTTGAATTATTTTTCTTTTCTTTTTCCCCACTTTGTTCATTCATT
CAGTAGTGCTGTCGACGTCATCGATCTTCACCACTTTTTTCTCGTTTGTTCAAAACCTCGTGCAAATATTTGCAAATATACAAGTAGTGGTACATGAAGA
ATCTAATACTACTGCTAGTAGGAGTAATTAATTAAATATGGGTGGTATTTAAGTTTTACAGAGACGCACGCTCCATTCCTCCGTCCTCTGCTCCTCTGAC
AAGATAGAATTGAGATGCAGAGATGGACAGCGGGGGTGAAAAGACCATTTAGCCCCCGATTCGGAGTCACTGACAGGTGGGTCCCGTGCCAAGGCAGTGC
CTGTGTGATTTCGCCCGTGGATGGGCGTCAGCAGTGAGCAGCGGGAAGCATCGTCACGTGCTTCTGCCAGGTGGGCCCGCGTGGGTGGAGGGGTCTCACT
GACAGGTGGGCCCGGAAAAAGCGGGGTCCCCGGCGATGCGACGCGCCACCGGCGAGCGGCAGCGGCGG