Detailed information on CNT30545618


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30259464Brassica napusBrassica rapa24.444.583.51194reverse complement

Expression of CNT30545618

Peptides detected in this lncRNA

>peptide 1 (29 aa)
LGYGVSLSLSLSLDQFITLGRRSSACFPF*

>peptide 2 (44 aa)
MFGFVCECFYLRRDISEFDLESSEPKPFWFPSPLPCWPHDFISI*

>peptide 3 (44 aa)
MCTANVVITCVIGKRWKNPHGVSPKEIRREYPLLVSSFVGEGDA*

>peptide 4 (93 aa)
MILFPSRSSLPINLHVLSIASSSAILRVPKMCSTSFSISVTGAFSRYFHTTDVHRQRCHYLCDRKKMEKSSWSLTKRDPTGVSTPSFFLCRRR*

>peptide 5 (77 aa)
VRIWCVSLFVSLSRSVHNSGKEKLCLLSFLNLSQIEKPREMIREFAKNRVRVPSFLKSAKLNFTELEINSLVLMGFS*

Sequence

>CNT30545618
CGTTAGGATATGGTGTGTCTCTCTCTTTGTCTCTCTCTCTCGATCAGTTCATAACTCTGGGAAGGAGAAGCTCTGCTTGCTTTCCTTTCTAAATTTATCT
CAAATTGAGAAACCTAGAGAGATGATAAGAGAGTTTGCCAAGAACAGAGTCCGGGTTCCTTCATTTCTCAAATCAGCGAAATTGAACTTCACCGAACTCG
AAATCAACTCGTTGGTTTTGATGGGTTTTTCTTAATTCTCTAGATCCTGAGAAAAATCTTGAAATTCCCAGAAGATGTTTGGGTTTGTGTGTGAATGTTT
TTACTTGAGGCGAGATATCTCCGAGTTTGATTTGGAATCGTCCGAGCCAAAGCCCTTCTGGTTTCCTTCTCCTCTTCCTTGCTGGCCACATGATTTTATT
TCCATCTAGATCCTCGCTGCCGATCAACCTCCATGTCCTGTCGATCGCCTCATCTTCCGCAATACTCCGGGTACCAAAAATGTGCTCAACCTCTTTCTCG
ATCTCTGTGACTGGAGCCTTCTCGCGCTATTTCCACACCACCGATGTGCACCGCCAACGTTGTCATTACCTGTGTGATCGGAAAAAGATGGAAAAATCCT
CATGGAGTCTCACCAAAAGAGATCCGACGGGAGTATCCACTCCTAGTTTCTTCCTTTGTCGGAGAAGGTGACGCCTGAAGAAACACTCGACGAAGCAGTC
TTTGCAACGTTAAAGAAGAGTTTATATTAGTTTCTCCTTCCTATTCAGTAACCCTCTCTCTTCTCCATGGTAACAAAAGATAACAGGGATCGTAA