Detailed information on CNT30259464


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30545618Brassica rapaBrassica napus44.524.483.51194reverse complement

Expression of CNT30259464

Peptides detected in this lncRNA

>peptide 1 (30 aa)
PCGQRGRGEGREKGFGSDGSESSSENPLLQ*

>peptide 2 (52 aa)
TLWPARKRRGKREGLWLGRLRIKLGESSAPVETVTPKPKHLVGEIQDFISGF*

>peptide 3 (55 aa)
YLVASEEEEREERRALARTAPNQARRILCSSRNSHTQTKTSCGGNSRFYLRILKN*

Sequence

>CNT30259464
TACCTTGTGGCCAGCGAGGAAGAGGAGAGGGAAGAGAGAAGGGCTTTGGCTCGGACGGCTCCGAATCAAGCTCGGAGAATCCTCTGCTCCAGTAGAAACA
GTCACACCCAAACCAAAACATCTTGTGGGGGAAATTCAAGATTTTATCTCCGGATTCTGAAAAATTAAGAGAAACCCACCAAAACCCACGAGTTGATTTA
CAGTTCCCCGATTTGGGTTGAATCAGCCGATTGTTTCTCCGGGAACTCTGTTCCTGGCGTCTCTCTCTGCCCCTGTCTCTCTGTTTCTCAATTTGAGAGA
AGAGAGAAGCAACAAAAGCAGAGAGCTTCTCCTTCTATGAATTGATCAACATTCAAGAGAGAGAGAGAGAGAGAGTGGAGTTGAAGTTATAATTGCGTAA
GAAAGAAAGGTTGATGATGAAAGTTATTGGTGTGCG