« Back to Brassica napus search


Detailed information on CNT30541559


BLAST search results

BLAST vs Swiss-Prot:
sp|Q944G9|ALFP2_ARATH, E-value = 2e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30223861Brassica napusHordeum vulgare21.5819.1983.49109forward

Expression of CNT30541559

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MFSGKCSEEHVRRRRTRATGLVPGSSRSGGILLRRSLRV*

>peptide 2 (94 aa)
TSSTLLSSVGVAFDEHTLLSLFRLTFSGVFSELSQRIGLGSSQESGLSCVHVLSSASPCFQASVLKSTCVGEGHVPRVWCLVHRVQEGFCCGGA*

Sequence

>CNT30541559
ACCTCTTCAACATTGTTGTCTTCAGTAGGTGTAGCCTTTGACGAACATACCCTCCTTAGCCTCTTCAGACTCACCTTCTCCGGTGTATTTTCCGAGCTGA
GCCAACGAATTGGCCTTGGCTCGAGTCAAGAGAGTGGTCTGAGCTGCGTTCACGTTCTCAGCTCTGCCTCCCCATGTTTTCAGGCAAGTGTTCTGAAGAG
CACGTGCGTAGGAGAAGGACACGTGCCACGGGTTTGGTGCCTGGTTCATCGCGTTCAGGAGGGATTCTGTTGCGGAGGAGCTTAAGGGTGTAGGAGGCAA
CTTGTTCAGGAGTAGCTCTGTCTTTAGACTCGGCTCCTGGAGTCACCATGCTCGGCTTCAGGAGGATACCTTCAAACATGACATTGTTCTGAGCTAGGTA
AAAGAAAACCTCAGCCCACACCTTCTCTGCTACTTCGTAAGTCCTGTCAATGTCGTGTTCTCCATCCAACAAGATCTCTGGCTCCACTATGGGAACCAAT
CCACT